Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 672 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 39.3 bits (90), Expect = 6e-08
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   IIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAI 60
           + VD E CT C  C   CP G  +   + +     F  S C  C +C A CP  AI
Sbjct: 516 VTVDPEACTLCQACTGVCPTGALL--DNPETPMLRFTESACVQCGLCAATCPETAI 569



 Score = 37.0 bits (84), Expect = 3e-07
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 13  TGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGA 59
           TGC +C   CP G        +G     D + C  C  C AACP GA
Sbjct: 285 TGCTRCLSLCPTGAIT----PNGDSVQIDPAICAGCGQCAAACPTGA 327



 Score = 29.3 bits (64), Expect = 6e-05
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 7   VDKEKCTGCGKCYDKCPKGPRIY 29
           +D   C GCG+C   CP G   Y
Sbjct: 308 IDPAICAGCGQCAAACPTGAAAY 330



 Score = 25.0 bits (53), Expect = 0.001
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 41  DVSDCHNCKICVAACPVGAIQVN 63
           D   C  C+ C   CP GA+  N
Sbjct: 519 DPEACTLCQACTGVCPTGALLDN 541



 Score = 23.1 bits (48), Expect = 0.004
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 48  CKICVAACPVGAIQVN 63
           C  C++ CP GAI  N
Sbjct: 287 CTRCLSLCPTGAITPN 302