Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 560 a.a., ribosomal protein S1 from Pseudomonas stutzeri RCH2

 Score = 79.7 bits (195), Expect = 4e-19
 Identities = 37/77 (48%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + IKHP ++++VGD +DV 
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 245 VLKFDRERNRVSLGLKQ 261



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697
           EG  ++  V N+ D+G F ++    +GL H+SE+   ++ I HP  V+ VGD V+VMV+D
Sbjct: 276 EGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNI-HPSKVVQVGDEVEVMVLD 334

Query: 698 IDFDKKRVSLSIKRAK 713
           ID +++R+SL IK+ K
Sbjct: 335 IDEERRRISLGIKQCK 350



 Score = 49.3 bits (116), Expect = 5e-10
 Identities = 36/151 (23%), Positives = 75/151 (49%), Gaps = 27/151 (17%)

Query: 567 LNELNISIKDIKEKKIDKISEKV-----DIEKLAEKLDCGIPTLEDIIKELEKPGRDPRE 621
           ++E++ + K+I   K+ ++ ++V     DI++   ++  GI   +           +P E
Sbjct: 306 VSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS----------NPWE 355

Query: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKH 680
           D                 +G  + GT+++I DFG FI +    DGL H+S+I+ +   + 
Sbjct: 356 DFSG-----------QFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEPGEE 404

Query: 681 PLDVISVGDIVDVMVMDIDFDKKRVSLSIKR 711
            +     GD +D +++ +D +++R+SL IK+
Sbjct: 405 AVRRFKKGDELDTVILSVDPERERISLGIKQ 435



 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 23/133 (17%)

Query: 578 KEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELED 637
           K  ++D +   VD E+  E++  GI  LED          DP          S+   + D
Sbjct: 411 KGDELDTVILSVDPER--ERISLGIKQLED----------DPF---------SNYAAVND 449

Query: 638 LKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMD 697
             +G I++GTV+ +   GA ID+G   +     SEI+   ++   +V+  GD V+  ++ 
Sbjct: 450 --KGSIVRGTVKEVDAKGAIIDLGNDIEATLKASEISRDRVEDARNVLKEGDEVEAKIIS 507

Query: 698 IDFDKKRVSLSIK 710
           ID   + +SLSIK
Sbjct: 508 IDRKSRVISLSIK 520