Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 563 a.a., SSU ribosomal protein S1P from Pseudomonas syringae pv. syringae B728a

 Score = 79.3 bits (194), Expect = 5e-19
 Identities = 37/77 (48%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + IKHP ++++VGD +DV 
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 246

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 247 VLKYDRERNRVSLGLKQ 263



 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 648 VRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMDIDFDKKRV 705
           V N+ D+G F ++    +GL H+SE+   ++ I HP  V+ VGD V+VMV+DID +++R+
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNI-HPSKVVQVGDEVEVMVLDIDEERRRI 344

Query: 706 SLSIKRAK 713
           SL IK+ K
Sbjct: 345 SLGIKQCK 352



 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 36/151 (23%), Positives = 75/151 (49%), Gaps = 27/151 (17%)

Query: 567 LNELNISIKDIKEKKIDKISEKV-----DIEKLAEKLDCGIPTLEDIIKELEKPGRDPRE 621
           ++E++ + K+I   K+ ++ ++V     DI++   ++  GI   +           +P E
Sbjct: 308 VSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS----------NPWE 357

Query: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKH 680
           D      + D +            GT+++I DFG FI +    DGL H+S+I+ +   + 
Sbjct: 358 DFSGQFNKGDKIS-----------GTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEE 406

Query: 681 PLDVISVGDIVDVMVMDIDFDKKRVSLSIKR 711
            +     GD +D +++ +D +++R+SL IK+
Sbjct: 407 AVRRFKKGDELDTVILSVDPERERISLGIKQ 437



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 31/147 (21%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 564 ENLLNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDL 623
           + L++  +IS  ++ E+ + +  +  +++ +   +D     +   IK+LE    DP    
Sbjct: 390 DGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERERISLGIKQLES---DPF--- 443

Query: 624 PKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLD 683
                 S+ + + D  +G I++G V+ +   GA I +    +     SEI+   ++   +
Sbjct: 444 ------SEYVTVND--KGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARN 495

Query: 684 VISVGDIVDVMVMDIDFDKKRVSLSIK 710
           V+  G+ ++  ++ +D   + +SLSIK
Sbjct: 496 VLKEGEEIEAKIISVDRKSRVISLSIK 522