Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 768 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  570 bits (1470), Expect = e-167
 Identities = 323/727 (44%), Positives = 456/727 (62%), Gaps = 40/727 (5%)

Query: 7   LQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDK 66
           +  E      QV   V+L+D G T+PFI+RYRKE TG LDD  LR   +RL YLR LE +
Sbjct: 12  IASEIKATAAQVAAAVELLDGGATVPFIARYRKEVTGGLDDTQLRVLSERLTYLRELEAR 71

Query: 67  KAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSEL 126
           +A I+  I  QGK+T EL+ KI  +    ELEDIY P++PKR+T+A IA  +GL  L+E 
Sbjct: 72  RASIVDSIRSQGKMTDELEGKIAGAVTKAELEDIYLPYKPKRRTKAEIARERGLGALAEA 131

Query: 127 ILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADY----RKFIRENT 182
           IL      P E  A        +V  V+ A+ GA+DIIAE +S+NAD     R  +RE  
Sbjct: 132 ILSDRSVAPAERAAAFLT---ADVPDVKTALDGARDIIAEAMSENADLLGRLRNHMREVA 188

Query: 183 FSEGIISVKAKNVDEK----SVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDA- 237
           F      ++A+ VD K    + +  Y+++SE    + GHR LA+ RG +E++L V +   
Sbjct: 189 F------LRARVVDGKQESGAKFSDYFDHSERWATVAGHRALAMLRGWNEEVLSVDIVVD 242

Query: 238 --------PVEFIHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKA 289
                   P E +    +   + +       L + +  +++  ++ S+  ++   L E+A
Sbjct: 243 QEASPSLRPTERMIAAAYN--VGDRLPADRWLLEVIGWTWRVKLSLSLSLDLMRELRERA 300

Query: 290 ENGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPH 349
           E  AI VF++NLK LLL  P  ++  +G DP  RTG K+A+VD TGK+LD   VYP  P 
Sbjct: 301 EEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLLDTATVYPFPPK 360

Query: 350 NKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEV-VNDVYYVIVNEAGAS 408
           N +  T+ ++  L+ K+ ++++AIGNGT SRE+E +V+++L  +       VIV+EAGAS
Sbjct: 361 NDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGAS 420

Query: 409 VYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSE 468
           VYSASE  + EFP  DV +R A+SIARRLQDPLAELVKI+PKSIGVGQYQHD++Q KLS 
Sbjct: 421 VYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR 480

Query: 469 SLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSK 528
           SL AVVE +VN+VGVDLNTAS  LL  VSG+    A+ IVA+R   G F SRKELLKV +
Sbjct: 481 SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDAMGAFASRKELLKVPR 540

Query: 529 LGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEK 588
           LG + FEQCAGFLRIP G    D + VHPE+Y +A+ ++      ++ +       +++ 
Sbjct: 541 LGARTFEQCAGFLRIPNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSL-------MADS 593

Query: 589 VDIEKLAEKL----DCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMIL 644
            +++KL  ++      G+PT++DI+ ELEKPGRDPR           V +++DLK GM L
Sbjct: 594 AELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGVDDIKDLKVGMRL 653

Query: 645 KGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKR 704
           +GTV N+  FGAF+DIGVH DGL H+S++ADRF+K P +V+  GD+V V V ++D  +KR
Sbjct: 654 EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVQVRVTEVDVARKR 713

Query: 705 VSLSIKR 711
           + LS+++
Sbjct: 714 IGLSMRK 720