Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 778 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  593 bits (1528), Expect = e-173
 Identities = 320/724 (44%), Positives = 472/724 (65%), Gaps = 20/724 (2%)

Query: 2   DIFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLR 61
           +I + +  E N++  QV  T+ L+D+G T+PF++RYRKE TG LDD  LR    RL YLR
Sbjct: 4   NIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLGYLR 63

Query: 62  NLEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLK 121
            L D++  I+  ID QGKLT ELK  I  ++  T LED+Y P++PKR+T+  IA   G++
Sbjct: 64  ELNDRRDVILSSIDAQGKLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEAGIE 123

Query: 122 PLSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIREN 181
           PL+ L+L+Q    P  E A  F+N E         + GA+ I+ E  +++A+  + +RE+
Sbjct: 124 PLANLLLQQRPANPEAEAA-AFINTEAGFADTRAVLDGARYILMERFAEDAELIRKVREH 182

Query: 182 TFSEGIISVKAKNVDEK--SVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDA-P 238
                ++  K     EK  + +  Y+E+SE + K+P HR LA+ RG +E IL + + A P
Sbjct: 183 LSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVADP 242

Query: 239 VEFIHDWIFKNIILEN--------SQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAE 290
                   +  +I+ N        S+  + LK  V  +++  +A  +E E  + L E+AE
Sbjct: 243 DSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQAE 302

Query: 291 NGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHN 350
           + AI+VF++NL  LL+  P  +K  +G DP  RTG K+A+V++TGK++  + ++P EP N
Sbjct: 303 DDAIKVFARNLHDLLMAAPAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEPQN 362

Query: 351 KVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEIL---KEVVNDVYYVIVNEAGA 407
           +  ++ + +  L+  + ++++A+GNGTASRE++ + +E++   KE    +  V+V+EAGA
Sbjct: 363 QWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAELIAAVKEHHPTLTKVMVSEAGA 422

Query: 408 SVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLS 467
           SVYSASEL ++EFP+ DV IR A+SIARRLQDPLAELVKI+PKSIGVGQYQHD++Q +LS
Sbjct: 423 SVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLS 482

Query: 468 ESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVS 527
           +SL AVVE  VNSVGVD+N ASV LL+ VSG+N  +AKN+V YR E+G+F+SRKELLKV 
Sbjct: 483 QSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLKVP 542

Query: 528 KLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKD-IKEKKIDKIS 586
           +LG KAFEQ AGFLRI EG N  D + VHPE+Y + E +     + + + I   ++ +  
Sbjct: 543 RLGPKAFEQAAGFLRIREGDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIRTL 602

Query: 587 EKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKG 646
           +  D    A     G+PT+ DI+KEL+KPGRDPR +      +  V E+ DLK  MIL+G
Sbjct: 603 KAGDFVTDA----FGLPTVTDILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEG 658

Query: 647 TVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVS 706
            V N+ +FGAF+D+GVH DGL HIS ++D+F+  P  V+  GD+V V VM++D ++KR+ 
Sbjct: 659 VVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIG 718

Query: 707 LSIK 710
           LS++
Sbjct: 719 LSMR 722