Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella amazonensis SB2B

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 35/77 (45%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE+L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD ++V 
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 245 VLKYDRERTRVSLGLKQ 261



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697
           E   L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V+++GD V+V+V+D
Sbjct: 276 ENTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLD 334

Query: 698 IDFDKKRVSLSIKRAK 713
           ID +++R+SL +K+ K
Sbjct: 335 IDEERRRISLGLKQCK 350



 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDI 698
           +G  + G +++I DFG FI +    DGL H+S+I+ +   +  +     GD ++ +V+ +
Sbjct: 363 KGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAVSEYKKGDEIEAVVLSV 422

Query: 699 DFDKKRVSLSIKRAK 713
           D +++R+SL +K+ +
Sbjct: 423 DPERERISLGVKQTE 437



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 637 DLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696
           D K+G I+ GTV  +   G  +++    +G   +++I+   ++    V SVGD V+   M
Sbjct: 447 DKKKGAIVNGTVTAVDAKGVTVELAEGVEGYIRVADISRERVEDASTVFSVGDAVEAKFM 506

Query: 697 DIDFDKKRVSLSIK 710
            +D   + VSLSI+
Sbjct: 507 GVDRKNRNVSLSIR 520