Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 573 a.a., Ribosomal protein S1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 71.6 bits (174), Expect = 1e-16
 Identities = 33/77 (42%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           +E L+EG IL+G V+NI D+GAF+D+G   DGL H+++I+ + I HP + +S+G  V V 
Sbjct: 196 METLREGEILEGVVKNITDYGAFVDLG-GVDGLLHVTDISWKRINHPTEALSIGQTVKVQ 254

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  + + +R+SL +K+
Sbjct: 255 VIRFNAETQRISLGMKQ 271



 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 646 GTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDIDFDKKR 704
           G V NI D+GAF+++    +GL H+SE++  +   HP  ++S    V+VM++D+D DK+R
Sbjct: 292 GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVDPDKRR 351

Query: 705 VSLSIKR 711
           +SL +K+
Sbjct: 352 ISLGLKQ 358



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDV 693
           LE    G  ++G ++NI +FG FI +    DG+ H+S++  +R     +     GD+V  
Sbjct: 368 LEGHPIGTEVEGEIKNITEFGLFIGLTGDIDGMIHLSDLDWNRSGDEAVKDYKKGDVVQA 427

Query: 694 MVMDIDFDKKRVSLSIKR 711
            V+D+D +K+R+SL +K+
Sbjct: 428 KVLDVDVEKERISLGVKQ 445



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDV-ISVGDIVDVMVMDI 698
           EG +L GTV  +    A +D+G+  +G   + E    F +   D  I +GD VDV V   
Sbjct: 30  EGSVLTGTVIGVSGDFAVVDVGLKSEGRVPLKE----FSRGGDDAEIKIGDTVDVFVERY 85

Query: 699 DFDKKRVSLSIKRAK 713
           +     + LS  +A+
Sbjct: 86  EDKDGLIVLSRDKAR 100