Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 788 a.a., S1 domain-containing protein from Phaeobacter inhibens DSM 17395

 Score =  574 bits (1479), Expect = e-168
 Identities = 318/723 (43%), Positives = 463/723 (64%), Gaps = 24/723 (3%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I Q +  E      QV   V L+DEG T+PF++RYRKEATG LDD  LR+  +RL YLR 
Sbjct: 7   ISQTIATEIGAAAKQVSAAVVLLDEGATVPFVARYRKEATGGLDDTQLRRLAERLEYLRE 66

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           LE ++A I++ +  Q KLT  L   I K+E   +LEDIY P++PKR+T+A IA   GL+P
Sbjct: 67  LEKRRAAILESVKSQDKLTDALATSIAKAETKAQLEDIYLPYKPKRRTKAMIARENGLEP 126

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L++ IL      P E LA+ ++     V + +DA++GA+DI+ E ++++A     +R   
Sbjct: 127 LADTILADRTADP-EALAQDYITEA--VATAKDALNGARDILTERLTESAALLGRLRMFL 183

Query: 183 FSEGIISVKAKNVDEK--SVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKL----D 236
             E +++ K     E+  + +  Y+ ++E    +P HR LA+ RG +E +L + +    +
Sbjct: 184 QKEAVVTAKVIEGKEQEGAKFSDYFHHTERWADVPSHRALAMLRGSNEGVLTLDVGPEPE 243

Query: 237 APVEFIHDWIFKNIILENSQTSEI-LKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIE 295
             V      +   +    +   +I L+     +++  ++ S+  E+   L  +A+  AI+
Sbjct: 244 EGVARAEAMVAAELGAGGNAPGDIWLRKVAGWTWRVKLSLSMMLELMGDLRGRAQEDAIQ 303

Query: 296 VFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTET 355
           VF++NLK LL   P   +  LG DP  RTG K A+VD TGK++    +YP +P N +   
Sbjct: 304 VFARNLKDLLFAAPAGARPTLGLDPGIRTGVKAAVVDATGKLVATETLYPFQPKNDLRGA 363

Query: 356 KKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEV---VNDVYYVIVNEAGASVYSA 412
           +  + +LI ++ ++++AIGNGTASRE+E +V+E+LK +   V     V+V+EAGASVYSA
Sbjct: 364 QVSIVKLIAEHGVELIAIGNGTASRETERMVAEVLKHLPAKVKAPTKVVVSEAGASVYSA 423

Query: 413 SELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGA 472
           SEL + EFP+ DV +R A+SIARRLQDPLAELVKI+PKSIGVGQYQHD++Q KLS+SL A
Sbjct: 424 SELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQHKLSKSLEA 483

Query: 473 VVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKK 532
           V+E  VN+VGVDLN AS  LL++VSG+  G+A+ IVA+R  NG F SR+ELLKV++LG K
Sbjct: 484 VIEDVVNAVGVDLNMASAPLLSHVSGLGPGLAEAIVAHRDVNGAFASRRELLKVARLGPK 543

Query: 533 AFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDIE 592
           AFEQCAGFLRI EGK   D + VHPESY +A  ++      I+ I       + +   ++
Sbjct: 544 AFEQCAGFLRIREGKEPLDASSVHPESYDVARKIVAACGRDIRQI-------MGDGAALK 596

Query: 593 KL-AEKL---DCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTV 648
            L AE+    + G+PT+ DI +ELEKPGRDPR        +  V  + DLK GM+L+GTV
Sbjct: 597 SLRAEEFVGGEVGLPTVRDIFEELEKPGRDPRPSFVTASFKDGVETITDLKPGMVLEGTV 656

Query: 649 RNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLS 708
            N+  FGAF+DIGVH DGL H+S++ADRF+K P +V+  G +V V V ++D  +KR++L+
Sbjct: 657 TNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVTEVDVPRKRIALT 716

Query: 709 IKR 711
           +K+
Sbjct: 717 MKK 719