Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 559 a.a., 30S ribosomal protein S1 from Phaeobacter inhibens DSM 17395

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 30/75 (40%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 637 DLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696
           +L EG  + G V+NI ++GAF+D+G   DGL H++++A R + HP +++S+G+ V V V+
Sbjct: 193 NLSEGQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI 251

Query: 697 DIDFDKKRVSLSIKR 711
            I+ +  R+SL +K+
Sbjct: 252 KINKETHRISLGMKQ 266



 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 645 KGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDIDFDKK 703
           KG V NI D+GAF+++    +GL H+SE++  +   HP  ++S    VDVMV++ID  K+
Sbjct: 286 KGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKR 345

Query: 704 RVSLSIKR 711
           RVSL +K+
Sbjct: 346 RVSLGLKQ 353



 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 17/145 (11%)

Query: 567 LNELNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKP 626
           ++E++ + K++   KI   S++VD+                ++ E++   R     L + 
Sbjct: 311 VSEMSWTKKNVHPGKIVSTSQEVDV----------------MVLEIDGAKRRVSLGLKQT 354

Query: 627 VLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVI 685
           +     +  E   EG  ++G V+NI +FG FI +    DG+ H+S+++ D   +  +   
Sbjct: 355 MRNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNY 414

Query: 686 SVGDIVDVMVMDIDFDKKRVSLSIK 710
             GD+V  +V ++D +K+R+SLSIK
Sbjct: 415 RKGDMVSAVVSEVDVEKERISLSIK 439



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 628 LRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISV 687
           L ++  E++  +EG ++KG V  I    A ID+G   +G   + E A+         ISV
Sbjct: 13  LLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFAN---PGEAPEISV 69

Query: 688 GDIVDV 693
           GD V+V
Sbjct: 70  GDEVEV 75