Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 35/77 (45%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE+L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD ++V 
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 245 VLKYDRERTRVSLGLKQ 261



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697
           E   L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V+++GD V+V+V+D
Sbjct: 276 ENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLD 334

Query: 698 IDFDKKRVSLSIKRAK 713
           ID +++R+SL +K+ K
Sbjct: 335 IDEERRRISLGLKQCK 350



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 636 EDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVM 694
           E   +G  + G +++I DFG FI +    DGL H+S+I+ +   +  +     GD +  +
Sbjct: 359 ERYAKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSDYKKGDEISAV 418

Query: 695 VMDIDFDKKRVSLSIKRAK 713
           V+ +D +++R+SL +K+ +
Sbjct: 419 VLSVDPERERISLGVKQTE 437



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L D K+G I+ GTV  +   G  I++    +G   +S+I+   I+    V SVGD V+  
Sbjct: 445 LADKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDTVESK 504

Query: 695 VMDIDFDKKRVSLSIK 710
            M +D   + +SLSI+
Sbjct: 505 FMGVDRKNRSISLSIR 520