Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 771 a.a., transcriptional accessory protein from Dechlorosoma suillum PS

 Score =  577 bits (1487), Expect = e-169
 Identities = 318/726 (43%), Positives = 461/726 (63%), Gaps = 23/726 (3%)

Query: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62
           I  ++ +E   +  QV   V L+DEG T+PFI+RYRKE TG LDD  LR   +RL YLR 
Sbjct: 5   IEHRIAEELGARPQQVMAAVALLDEGATVPFIARYRKEVTGGLDDTQLRNLEERLTYLRE 64

Query: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122
           LED++A ++  IDEQGKLT ELK  ++ ++    LED+Y P++ KR+T+A IA   GL+P
Sbjct: 65  LEDRRAAVLASIDEQGKLTPELKAAVDMADTKQRLEDLYLPYKQKRRTKAQIAREAGLQP 124

Query: 123 LSELILKQILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENT 182
           L++ +L      P  E AE + N E      +  + GA+ I+ E+ +++A+    +R   
Sbjct: 125 LADALLADPTLVPESE-AEKYFNAEAGFADTKAVLDGARQILMEQFAEDAELLGSLRTYL 183

Query: 183 FSEGII--SVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVE 240
              GI+  ++ A   +  + +  Y+EYSEAI+ IP HR LA+ RG +E  + + L    E
Sbjct: 184 DEHGILKSTLIAGQEEAGAKFRDYFEYSEAISDIPSHRALALFRGRNEGAISLALVLDSE 243

Query: 241 FIHD-----------WIFKNIILENS--QTSEILKDTVIDSYKRLIAPSIEREIRNSLTE 287
              +            I K   +++      + L DTV  +++  +A  +E E+   L E
Sbjct: 244 LDEENKPLGPNPCELRIAKRFGIKDQGRPADKWLADTVRWAWRVKMALHLETELMTVLRE 303

Query: 288 KAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTE 347
           KAE  AI VF +NLK LLL  P   K  +G DP  RTG K+A+VD+TGK+LD   +YP E
Sbjct: 304 KAEEEAIRVFGRNLKDLLLAAPAGQKATMGLDPGLRTGVKVAVVDQTGKLLDTATIYPHE 363

Query: 348 PHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVNDVYY--VIVNEA 405
           P      +   +  L  K++++++AIGNGTASRE++ + +++++     +    V+V+EA
Sbjct: 364 PRRDWEGSLHTLAVLAQKHNVNLIAIGNGTASRETDKLAADLIRIASPHMALAKVVVSEA 423

Query: 406 GASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKK 465
           GASVYSASE  + EFPE DV +R A+SIARRLQDPLAELVKI+PKSIGVGQYQHD++Q K
Sbjct: 424 GASVYSASEFAAREFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQTK 483

Query: 466 LSESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLK 525
           L+ +L  VVE  VN+VGVD+NTAS+ LL  +SG+N  +A NIVAYR ++G F +R  L  
Sbjct: 484 LARALDGVVEDCVNAVGVDVNTASIPLLARISGLNQTLAANIVAYRDQHGPFPNRLALKN 543

Query: 526 VSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKD-IKEKKIDK 584
           V +LG K FEQ AGFLR+P   N  D + VHPE+Y + E +L ++   IK+ I + ++ K
Sbjct: 544 VPRLGDKTFEQAAGFLRVPSSDNPLDASAVHPEAYPVVERILADIKKGIKEVIGDARLVK 603

Query: 585 ISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMIL 644
             + V  +   EK   G+PT++DI+KELEKPGRDPR +    V +  V E+ DL+ GMIL
Sbjct: 604 SLQPV--KYTDEKF--GLPTVQDILKELEKPGRDPRPEFKTAVFKDGVEEMRDLQPGMIL 659

Query: 645 KGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKR 704
           +G V N+  FGAF+DIGVH DGL H+S ++ +F+K P +V+  GDIV V V+++D  +KR
Sbjct: 660 EGVVTNVAAFGAFVDIGVHQDGLVHVSALSTKFVKDPHEVVKAGDIVKVKVLEVDMARKR 719

Query: 705 VSLSIK 710
           ++L+++
Sbjct: 720 IALTMR 725