Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 555 a.a., ribosomal protein S1 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 35/77 (45%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           LE+L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD ++V 
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D ++ RVSL +K+
Sbjct: 245 VLKYDRERTRVSLGLKQ 261



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697
           E   L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V+++GD V+V+V+D
Sbjct: 276 ENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLD 334

Query: 698 IDFDKKRVSLSIKRAK 713
           ID +++R+SL +K+ K
Sbjct: 335 IDEERRRISLGLKQCK 350



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDI 698
           +G  + G +++I DFG FI +    DGL H+S+I+ +   +  +     GD +  +V+ +
Sbjct: 363 KGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSV 422

Query: 699 DFDKKRVSLSIKRAK 713
           D +++R+SL +K+ +
Sbjct: 423 DPERERISLGVKQTE 437



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L D K+G I+ GTV  +   G  +++    +G   +++I+   I+    V SVGD ++  
Sbjct: 445 LADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAK 504

Query: 695 VMDIDFDKKRVSLSIK 710
            M +D   + +SLSIK
Sbjct: 505 FMGVDRKNRSISLSIK 520