Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 776 a.a., transcription accessory protein from Klebsiella michiganensis M5al

 Score =  575 bits (1481), Expect = e-168
 Identities = 319/716 (44%), Positives = 459/716 (64%), Gaps = 23/716 (3%)

Query: 10  EFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRNLEDKKAQ 69
           E   +  QVE  V+L+DEGNT+PFI+RYRKE TG LDD  LR    RL YLR LED++  
Sbjct: 13  ELQARAEQVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLGYLRELEDRRQA 72

Query: 70  IIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKPLSELILK 129
           I+K I EQGKLT  L++ I  +   TELED+Y P++PKR+TR  IA   GL+PL+EL+  
Sbjct: 73  ILKSIGEQGKLTEALEKAINGTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLAELLWN 132

Query: 130 QILEKPIEELAEGFVNPELEVNSVEDAISGAKDIIAEEISDNADYRKFIRENTFSEG--I 187
           +    P  E A+ +++ +  V   + A+ GA+ I+ E  +++A     +R+  +     +
Sbjct: 133 EPSHDPETEAAK-YIDADKGVADSKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLV 191

Query: 188 ISVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESEKILQVKLDAPVEF------ 241
            +V +   +E + +  Y+++ E I  +P HR LA+ RG +E +LQ+ L+A  +F      
Sbjct: 192 ATVVSGKEEEGAKFRDYFDHHEPIATVPSHRALAMFRGRNEGVLQLSLNADPQFDEPPKE 251

Query: 242 ------IHDWIFKNIILENSQTSEILKDTVIDSYKRLIAPSIEREIRNSLTEKAENGAIE 295
                 I D +   + L N+      K  V  +++  +   +E E+  ++ E+AE+ AI 
Sbjct: 252 SHGEQIIIDHL--GLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAIN 309

Query: 296 VFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLDKTVVYPTEPHNKVTET 355
           VF++NL  LL+  P   +  +G DP  RTG K+A+VD TGK++    +YP     +  + 
Sbjct: 310 VFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHT--GQAAKA 367

Query: 356 KKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVN-DVYYVIVNEAGASVYSASE 414
              V  L  KY++++VAIGNGTASRE+E    ++ K+        VIV+EAGASVYSASE
Sbjct: 368 AVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQFPKVTAQKVIVSEAGASVYSASE 427

Query: 415 LGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSESLGAVV 474
           L + EFP+ DV +R A+SIARRLQDPLAELVKIDPKSIGVGQYQHD++Q +L+  L AVV
Sbjct: 428 LAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVV 487

Query: 475 ESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAF 534
           E  VN+VGVDLNTASV LL  V+G+   +A+NIV++R ENG+F++R++LLKVS+LG KAF
Sbjct: 488 EDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVSWRDENGQFQNRQQLLKVSRLGPKAF 547

Query: 535 EQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDKISEKVDIEKL 594
           EQCAGFLRI  G N  D + VHPE+Y + E +L     ++KD+     +  + K  ++  
Sbjct: 548 EQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRNLKA-VDFT 606

Query: 595 AEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVDF 654
            +K   G+PT+ DIIKELEKPGRDPR +         V  + DL  GMIL+G V N+ +F
Sbjct: 607 DDKF--GVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTNVTNF 664

Query: 655 GAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710
           GAF+DIGVH DGL HIS ++++F++ P  V+  GDIV V VM++D  +KR++L+++
Sbjct: 665 GAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVMEVDLPRKRIALTMR 720