Pairwise Alignments

Query, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

Subject, 577 a.a., ribosomal protein S1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 33/75 (44%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDI 698
           EG+  +G V N+VD+GAF+++    +GL HISE++  R ++HP  ++ VGD V+V+++ +
Sbjct: 292 EGLRGQGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGV 351

Query: 699 DFDKKRVSLSIKRAK 713
           D DKKR+SL +K+ K
Sbjct: 352 DPDKKRISLGMKQVK 366



 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 29/77 (37%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694
           L  L+EG ++KG  +NI ++G F+D+G   DGL HI++++ + I+HP +++S+G  +++ 
Sbjct: 202 LRTLEEGQVVKGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQELELK 260

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+  D D ++VSL +K+
Sbjct: 261 VLSFDRDSQKVSLGMKQ 277



 Score = 63.2 bits (152), Expect = 4e-14
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 636 EDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVM 694
           E   EG IL+G ++NI +FG FI I    DGL H+S+I+  + I+HP ++  VGD+V   
Sbjct: 375 EKYPEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAK 434

Query: 695 VMDIDFDKKRVSLSIKR 711
           V+ +D + ++ +L +K+
Sbjct: 435 VLTVDQENEKFTLGVKQ 451



 Score = 59.7 bits (143), Expect = 4e-13
 Identities = 26/73 (35%), Positives = 46/73 (63%)

Query: 641 GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDF 700
           G ++ G+V NI DFG F+++    +GL H+SEI+ + IK P ++   G  +   V+ +  
Sbjct: 467 GTLVTGSVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSA 526

Query: 701 DKKRVSLSIKRAK 713
           +++R+ LSIK+ K
Sbjct: 527 EERRLGLSIKQLK 539



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 637 DLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696
           DL+EG I+KG +  + D    +D+    +G    +E  D    +   +I VGD VDV V+
Sbjct: 33  DLEEGSIVKGEIVRLGDDYVLVDVNFKSEGQIAANEFRD---ANGDLIIGVGDRVDVFVV 89

Query: 697 DIDFDKKRVSLSIKRAK 713
             +  +  ++LS ++AK
Sbjct: 90  RKNEMEGTITLSYEKAK 106