Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  123 bits (308), Expect = 4e-32
 Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 4/232 (1%)

Query: 385 KEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDRLKR 444
           + ++ +K+E +S VSHELRTPLTAI G + +L    AG++S++ +  + +  +NS+RL R
Sbjct: 446 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVR 505

Query: 445 ITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVL----LEDVDNLDI 500
           + +++ D+  ++   L     R +++  V   L     + +   + L      ++ + + 
Sbjct: 506 LINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSEA 565

Query: 501 KGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIFD 560
             D  +  QV++NL+ NAIK S     VTV        + + + D+GPGIP+    +IF+
Sbjct: 566 TLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFE 625

Query: 561 KFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFPL 612
           +F Q DSS  R+ GG+GLGLA+ + +V+   G I  + +  +GT   +  PL
Sbjct: 626 RFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLPL 677