Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  141 bits (356), Expect = 9e-38
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 383 ELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDRL 442
           E K ++ L+ E +S VSHELRTPLT+I G + L+     G++ E   E + +  +NS RL
Sbjct: 565 ERKRIERLQREFISTVSHELRTPLTSITGALGLICSNVMGEVPEAMHELLDIAQQNSQRL 624

Query: 443 KRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVL-LEDVDNLDIK 501
             + D++ D+  +    +     R  L+ ++   LRS   +AE   +VL L     + ++
Sbjct: 625 NALIDDLLDMDKLHAGKMRFALLRQPLQPQLELALRSNRNYAEQHGVVLQLGACPAVTVE 684

Query: 502 GDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIFDK 561
            D  ++ QVLSNL+ NA KFS    +V +      G + + + D+GPGI  +   ++F K
Sbjct: 685 IDAMRLQQVLSNLLSNAAKFSPAGEQVELSATLSDGRVRISVRDRGPGISADFRERVFQK 744

Query: 562 FYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKG 603
           F Q DSS  R+ GG+GLGLA+ K+++E  GG I  ES+ G G
Sbjct: 745 FAQADSSDSRQQGGTGLGLAISKELIERMGGQIGFESEPGHG 786