Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  138 bits (348), Expect = 1e-36
 Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 5/234 (2%)

Query: 383 ELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDRL 442
           E K ++ +KSE++SIVSHELRTPLT+I G + L+     G+ S   ++ + +  +NS RL
Sbjct: 748 ERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPSMRQMLDIAHQNSLRL 807

Query: 443 KRITDNMSDL--VTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVLLEDVDNLDI 500
            R+ D++ D+  +      L ++   + ++ ++  +  +  Y A+ +  + L    +L +
Sbjct: 808 GRLVDDLLDMDKLVAGKMALALRAHSLQVQLQLA-VGANQGYAAQHRVQLELLPTPSLQL 866

Query: 501 KGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGN-IHLEITDQGPGIPKEHLGKIF 559
             D  ++ QVL+NLI NA+KFS +   V  +G E +G+ + + + DQGPGI  E   +IF
Sbjct: 867 MADDDRLQQVLANLISNAVKFSPQDGTVR-LGGERRGDWVRIWVRDQGPGIAPEFRARIF 925

Query: 560 DKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFPLI 613
            KF Q DSS  R+ GG+GLGLA+ K+++E   G I  +S+ G G       PL+
Sbjct: 926 QKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPLV 979