Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

Subject, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis JJ

 Score =  248 bits (634), Expect = 5e-70
 Identities = 164/529 (31%), Positives = 276/529 (52%), Gaps = 17/529 (3%)

Query: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68
           IGTKLLIFSII V+IPI ++  VS +TI+  M      +L+ +  + N  MDS   E  T
Sbjct: 8   IGTKLLIFSIITVIIPIAILGIVSNNTITQDMKEQSADKLESSNEMANTIMDSRFTELCT 67

Query: 69  MTAYTADLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDNAEI 128
           +  Y +    V  ++K  + D L+  A  L+  S  DL +FT   G+ I +S G+    +
Sbjct: 68  LAEYASYTQGVKTSIKTGNVDDLELRAETLKSASNADLVIFTGNGGSTIASSSGE-GITL 126

Query: 129 SSYVKKLLEKNTIYAYDILPNEEASKYSEYELDGND-ALTIFTVAPIYDGNSLIGTVTYV 187
            S + K+ + +    ++ +P + A K+S+ ++ G D AL+I    PIYD    +G V ++
Sbjct: 127 DSTILKVSKSSEKSGFEKIPEQTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVAFI 186

Query: 188 DIMNKDDYWVDRVKEVTGDEASIYLNNVRISTTCIKDGVDFVGELADEDIYETVSKKQ-D 246
           D++N D   VD +K  TGDE++++L N RIST+ +      VG  A + +Y TV K+  +
Sbjct: 187 DVLNNDHALVDSIKASTGDESTLFLENYRISTSVVSGNSRAVGTTASDVVYNTVVKENTE 246

Query: 247 VRSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTALLNSVIQKIFFIAFSSLII 306
              +  + G  +L KY P+ + +G  IGM  VGTP++ FT ++N+       IA   L+I
Sbjct: 247 FMGSANVVGQSFLTKYVPLKDSNGATIGMLFVGTPEAQFTQMVNNARNNTIIIALFGLLI 306

Query: 307 AVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGKS 366
           AV +++I ++ I   + +L++    FG GNYD   ++ TGDELE+LA+SFNKMA++I + 
Sbjct: 307 AVVISLISSRSITKPLNQLEDGVHKFGSGNYDHTITVKTGDELEDLADSFNKMANDIKEL 366

Query: 367 DKKLKSDAHTLKTSFDELKEVDNLKSE---ILSIVSHELRTPLTAILGYVELLKDETAGK 423
              L +D  +L  +  E+ EV N  +E    +    +  R  L   + +      E   K
Sbjct: 367 HSILDADKLSLANTLKEIFEVMNHLAEGDFSIRADENRERNKLQKTINHA----IENVSK 422

Query: 424 LSEKQKEFISVIS----ENSDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRS 479
           + E  K  I+V+S    + S+ LKR  +    +    N++     D+    ++ +D L  
Sbjct: 423 MMENLKSEITVLSGELEDVSEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDDL-- 480

Query: 480 FDYFAESKNIVLLEDVDNLDIKGDKSKIHQVLSNLIENAIKFSKKQTKV 528
            +  A++ ++V  +   ++D   +     +     +ENAI   +K T V
Sbjct: 481 -EKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNV 528



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 300 AFSSLIIAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASID-----TGDELEELAE 354
           AF  +  +V  +  +  +I D+ K   N+ +   R N  + ASI      T +EL   +E
Sbjct: 640 AFMKIKESVETSAKMIAQIKDNAKNASNNTQEALR-NVQDIASISEEFAATAEELTASSE 698

Query: 355 SFNKMADEIGKSDKKLKSDAHTLKTSFDELK 385
             N+  +EI  S +++   +  L    DE K
Sbjct: 699 EQNRAVEEIDASAERMMDISRKLAEDADEFK 729



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 40/226 (17%)

Query: 319 VDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGKSDKKLKSDAHTLK 378
           VDS  ++K+++E+   G      +IDT  ++  + +   K   E+G+  KK         
Sbjct: 498 VDSAIEVKDNSET---GVKKVENAIDTMQKITNVIDELGKSIQELGEESKK--------- 545

Query: 379 TSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISEN 438
                + EV  L  ++        +T L A+   +E  +   AG      K F  V SE 
Sbjct: 546 -----INEVTVLIKDVAE------QTGLLALNASIEAARAGDAG------KGFAVVASEI 588

Query: 439 SDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVLLEDVDN- 497
               + I  ++ D+    N+ +    + IN K E    L         + +V +++V++ 
Sbjct: 589 KSLAEEIKKSVEDI----NRTI----NGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSA 640

Query: 498 -LDIKGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLE 542
            + IK       ++++ + +NA K +   T+  +   +D  +I  E
Sbjct: 641 FMKIKESVETSAKMIAQIKDNA-KNASNNTQEALRNVQDIASISEE 685