Pairwise Alignments

Query, 292 a.a., NAD-dependent epimerase/dehydratase family protein from Methanococcus maripaludis S2

Subject, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (405), Expect = 4e-44
 Identities = 110/313 (35%), Positives = 169/313 (53%), Gaps = 26/313 (8%)

Query: 4   LVTGGAGFIGSHIVDMLIENGHDVSILDNLSTGNEKNLNSSAK-----------FINGDI 52
           L+TG AGFIGS++++ L++    V  LDN +TG + NL+               FINGDI
Sbjct: 19  LITGVAGFIGSNLLEQLLKLNQTVIGLDNFATGRQHNLDEVQSLVTSEQWMRFSFINGDI 78

Query: 53  LDKNLD---LTGFECVIHEAAQINVRTSVENPSLDANINILGTVNILEKMKEYGVKKIIF 109
            D  +    + G + V+H+AA  +V  S+ +P      NI G +N+L+  KE  VK   +
Sbjct: 79  RDYAICEAVVNGVDYVLHQAALGSVPRSIADPITTNAANITGFLNMLQAAKEAEVKSFTY 138

Query: 110 SSSGGAVYGEPEYLPVDEKHSLKPLSPYGLSKFCAEEYIKLYNMLYDIEYCILRYSNVYG 169
           ++S  + YG+   LP  E++   PLSPY ++K+  E Y  +Y   Y  E   LRY NV+G
Sbjct: 139 AASS-STYGDHPALPKVEQNIGNPLSPYAVTKYVNELYASVYARTYGFETIGLRYFNVFG 197

Query: 170 ERQDPLGE-AGVISIFIDKMKKGEVPVIYGDGNQTRDFVNVKDVARANLMAL----NWKN 224
            RQDP G  A VI  +   M KGE   I GDG  +RDF  + +V + N++A       KN
Sbjct: 198 RRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDNVVQMNILAATAASEAKN 257

Query: 225 EIVNIGSGKETSVNELFKII-----SSEIGFDKDPIYKKEREGEVYKIYIDYSKAKS-LG 278
           E+ N+  G  T++N+L+  I     ++ I  +++P Y+  R G+V     D SKA + LG
Sbjct: 258 EVYNVAVGDRTTLNDLYFAIKDSLNANGINVNQNPNYRDFRAGDVRHSQADVSKAVTRLG 317

Query: 279 WMPEVELDDGIKK 291
           +    ++ +GI +
Sbjct: 318 YQYTHKILEGISE 330