Pairwise Alignments

Query, 500 a.a., flippase from Methanococcus maripaludis S2

Subject, 504 a.a., flippase from Methanococcus maripaludis JJ

 Score =  502 bits (1292), Expect = e-146
 Identities = 248/501 (49%), Positives = 352/501 (70%), Gaps = 6/501 (1%)

Query: 1   LSYKERMIKGASWNFLFLVLAAPIGYFVRILYANSLSKVEVGLFYAILDLISMVSIFRGL 60
           +SYKER++KG SWNFL L+ AAPIGYFVRILY+N + K++VGLFYA+ D   M++IF+ L
Sbjct: 1   MSYKERVLKGVSWNFLLLLAAAPIGYFVRILYSNEIPKLDVGLFYAVFDFCCMIAIFKNL 60

Query: 61  GLNNTVIYFIPKFLVQNRKDLIKSTLISVLLIQTIMAVLMAVLMYLISPTLINKYINNQG 120
           GLN  ++ FIPK+L + R DL+KS++I   ++QT ++++M +L+ L+S  +   YINNQG
Sbjct: 61  GLNAALVRFIPKYLHEKRLDLVKSSIICAGVLQTTVSLIMTLLIILLSSFIATYYINNQG 120

Query: 121 QF-GDISLIFVVFTIMIFGYYIFDGTKALLFNSFQGFQSQKIYGTCNFLNILSILILSII 179
           QF G + L+  V  I+  GY+ F     ++ NS  GFQ+QK YGT NF+ I  +LI+S I
Sbjct: 121 QFTGQLDLVICVLIILSIGYW-FQSIMDVVANSIWGFQNQKYYGTINFVKIFMVLIISFI 179

Query: 180 FIYFG--AGLYSPALAYTITPLIMILIYGKIFLKEVFPEFFTEKITFSKELLNDIFSYGM 237
            I+      +++P  AYT+ P++MI IY  IF+K++FPEFF EK +FSK+L  D+FSYG+
Sbjct: 180 LIHVFDVRTVFTPICAYTLAPILMIFIYTYIFIKKIFPEFFIEKFSFSKKLTKDLFSYGL 239

Query: 238 PIMFGSAGFIIMGYLDSICLTYFTGLNAVADYRNVAMPTVLVLSYFASAICKVILPMSTE 297
           P+M GSAG +++ Y+D ICLTYF GLNAVADYRNVAMPTV +L YFA+A+  V+ PMS+E
Sbjct: 240 PLMMGSAGALVLNYIDGICLTYFAGLNAVADYRNVAMPTVSILRYFATAVGAVLFPMSSE 299

Query: 298 MWEKGEKKNLSDGLKKILSYSFIISVPFAVILAYFPTELVNIFFNENYLTAAPTMSILSF 357
           +WE G    L   ++KI  YSF+   P  V+ AYFP  +VN+FFN  YL AA  + ILS 
Sbjct: 300 LWEMGHGGILGKSVEKICLYSFVAVFPITVLTAYFPEVIVNLFFNTQYLPAADAIRILSL 359

Query: 358 GVIFLSMNTIVFDIFNGIGKPHLSAKILYIGALFNLIFNLLLIPKFGTIGAAFATTLCYI 417
           G IF ++N+I F++ NGIGK  LS KI+Y GA+FNLIFN+LLIPKFG +GA+  T L Y+
Sbjct: 360 GTIFFTLNSIGFNVLNGIGKSLLSTKIIYFGAIFNLIFNILLIPKFGIVGASATTVLGYL 419

Query: 418 LIQILQTRYLGKFLDYKFPLKNFFLCLFSSSISIVPLLIIKSMILNEYVLILFSGVLYFL 477
           L+ ILQ RYLG F++Y   LK + +       S++PL+ + + I+N  +L L  G+  +L
Sbjct: 420 LMWILQARYLGDFINYSNMLKKWLITTLLGVFSLIPLIFV-TKIINNIILQLSVGMAVYL 478

Query: 478 -TYFLSIYVLKVDDLKEIKSL 497
             Y L I + K+ +++++K +
Sbjct: 479 GVYALGIILFKIIEIEKLKEM 499