Pairwise Alignments

Query, 348 a.a., radical SAM protein from Methanococcus maripaludis S2

Subject, 370 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 37/298 (12%)

Query: 28  PKVAIVELTNDCNYQCKFCPMNSENETIRRKVTREKTYMSFKDFKHIVDNYGYLIDDLGL 87
           P+   +ELTN CN  C  CP +  + T  RK       +  +    I  +Y Y    L L
Sbjct: 87  PQRLQLELTNCCNNDCVMCPRHGGHFT--RKPKHMDLDLVRRALDEIAQHYNY---QLQL 141

Query: 88  ASHGESLLHPEFEKFILYLKEKRI---NWNITTNGSLLSKEMTEIFKKYPPTQIIFSLYT 144
              GE LLHP   + +  L++       W I++ G  L+ ++             +SL  
Sbjct: 142 FHIGEPLLHPRIFEILDMLEDYPTLGRKW-ISSKGQELTPDIMRRVLTSKVDYFNYSLLA 200

Query: 145 LDSQRYEQLCVGGNLNVVLDNLNHYLEHKDNNTKVLIRTINMPRLNGEMGKFKEYFAKYR 204
           +    Y ++   G+   V  NL    + K +        +  P L  +M +  E   +  
Sbjct: 201 MTPATYARIVPNGDYATVRGNLERLADLKRD------LGVQRPYLRAQMIEMDEALHE-- 252

Query: 205 NVGYLFGVLNTWAGRVDISKYDK-NLKNHKTSDKNNYCLQPWQHV-------------II 250
               +   L+TWA RVD+   ++    +++   K    ++P + +              I
Sbjct: 253 ----IDAFLDTWADRVDLLSVNRLETFSNRIDAKVTSAIKPRESIGPRACKRLERGDLYI 308

Query: 251 NSDTGVYLCNND--DDTPIGYLSKTELEKIWNSKEYIQVRKNILDGKLTQNSQCNECD 306
            S+  V +C+ D   +  +G L++T L ++     Y Q+  +   G  +Q   C  C+
Sbjct: 309 LSNGEVTVCDTDFNGELSLGNLNETTLAEMARGARYRQIIDSHERGDYSQIELCRHCE 366