Pairwise Alignments

Query, 314 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 319 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  559 bits (1440), Expect = e-164
 Identities = 273/309 (88%), Positives = 285/309 (92%)

Query: 1   MLSDLIFKIKGENNNKEISDFLNILDCIYKNKEPEIDEFILKNLGIEKRENDLKIYGKNY 60
           MLSDL  +IK ENNN+EISDFLNILDCIYKN EPEIDE  LK L IEK  NDL IYGKNY
Sbjct: 1   MLSDLFLEIKKENNNEEISDFLNILDCIYKNNEPEIDESTLKKLEIEKIGNDLAIYGKNY 60

Query: 61  PLFKMLYYFNEITLFNSEKESIIFLKNNNLNPSKTYLKLDNFEKERLKELILNFAENKVP 120
           PLFKMLYYFNEI LFNSEKESIIFLKNNNLNPSKTY +LDNFEKERLKELILN+AENKVP
Sbjct: 61  PLFKMLYYFNEIPLFNSEKESIIFLKNNNLNPSKTYFELDNFEKERLKELILNYAENKVP 120

Query: 121 NMYKTFVKDLIFGNTYYFSKYNMELKEYVSNLNSVYKLKEYDIVKNCILKKELPPKNLIL 180
           ++YK FVKDLIFGNTYYFSKYNM LKEYVSNLNS YKLKEYDIVK CILKKELPPKNLIL
Sbjct: 121 DIYKPFVKDLIFGNTYYFSKYNMGLKEYVSNLNSAYKLKEYDIVKTCILKKELPPKNLIL 180

Query: 181 KYKTDLSKSIDLFNKKLNNTRIREFSIDFDGKNFDCQYIYFKQSLWDKIKGWFFGEINGI 240
           KYKTDLSKSIDLFNKKLNNTRIREFSIDF+ K+FDCQYIY KQSLWDKIKGWFFGEINGI
Sbjct: 181 KYKTDLSKSIDLFNKKLNNTRIREFSIDFNEKSFDCQYIYLKQSLWDKIKGWFFGEINGI 240

Query: 241 YYPAIVNISYNNSKIDYLKPFFILNDNEDKINVVAKVPKLLYLKYGLTLNYIKLNGKHTY 300
           YYPA+VNISYNN KIDYLKPFFILNDNE +INVVA+VPKLLYLKYGLTLN+IKLNGKHTY
Sbjct: 241 YYPALVNISYNNPKIDYLKPFFILNDNEYEINVVARVPKLLYLKYGLTLNHIKLNGKHTY 300

Query: 301 FGKWNIRNF 309
           FGKWN   F
Sbjct: 301 FGKWNNLKF 309