Pairwise Alignments

Query, 314 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 467 a.a., single-stranded-DNA-specific exonuclease RecJ from Methanococcus maripaludis JJ

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 40/248 (16%)

Query: 52  DLKIYGKNY-PLFKMLYYFNEITLFNSEKESIIFLKNNNLNPS-------KTYLKLDNFE 103
           DL+ YGK+  PLF  + YF ++    ++ +S I    NN+N         K YL    F+
Sbjct: 194 DLQFYGKHTRPLFTSIKYFTDVRTDLTDNDSRIINFINNVNRKHGTDIIPKDYLCDLTFD 253

Query: 104 KERLK-ELILNFAENKVPNMYKTFVKDLIFGNTYYFS----KYNME-LKEYVSNLNSVYK 157
           ++++     L+     +P  ++  +  +IFG +Y  +    K N++ L+E+ + +N   +
Sbjct: 254 QKKIMGSEFLHKCSRYIPPAWRIHLPKVIFGESYELTNEEFKSNLKNLEEFSTCINGCSR 313

Query: 158 LKEYDI----VKNCILKKELPPKNLILKYKTDLSKSIDLFNKKLNNTRIREFSIDFDGKN 213
             EYD+    +K    K       ++ K+K +L+ S++     +   +   F        
Sbjct: 314 YDEYDVPLEVLKGDRDKNYSKMLKMLKKHKRNLAGSMNFLRNDVEIVQKENFQ------- 366

Query: 214 FDCQYIYFKQSLWDKIKGWFFGEINGIYYPAIVNISYNNSKIDYLKPFFILNDNEDKINV 273
                 YFK       K    G I GI    +  +SY+  K+D+ KP F +++ +D   V
Sbjct: 367 ------YFKVD-----KNAIKGNIVGI----VAGMSYSLEKVDWKKPIFAVSEMDDGYKV 411

Query: 274 VAKVPKLL 281
            A+ PKLL
Sbjct: 412 SARCPKLL 419