Pairwise Alignments

Query, 494 a.a., succinate dehydrogenase/fumarate reductase iron-sulfur subunit from Methanococcus maripaludis S2

Subject, 247 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 21/231 (9%)

Query: 263 MRVAFFTGCLVDFRLQEIGKSAIRVLNAHGVSVIIPKNQVCCGSPFIRTGQTDISESLKK 322
           M++A F  CLV+  +  +G + + +L   G  VI+PK Q CCG P   +G  D ++    
Sbjct: 1   MKIALFIPCLVNQMMPHVGIATVELLEKLGHQVILPKGQTCCGQPMTNSGCFDEAKKTTL 60

Query: 323 QNLEIFNKLNVDSVVTLCAGCGSTLKNDYKEKK---------FKVMDITEVLVKVGLID- 372
           + L  F  +  D++V   A C    K ++ E            K+ ++TE L  V  I  
Sbjct: 61  KLLNAFKGVECDAIVCPAASCLVAAKENFHEFDDSPEAQAVIDKLYELTEFLHDVAPIPA 120

Query: 373 -YKPLDITVTYHDPCHLRR-----GQKVYLEPR-----KILESIPKLKFIEMEIPDQCCG 421
             K  +  ++    CH  R          + PR      +L  IP ++ +  +  D+CCG
Sbjct: 121 FNKAFNFKISLQLSCHGIRMLDLATPSEQMGPRTNKVEAVLSRIPGIEIVYPDRRDECCG 180

Query: 422 AGGGVRSGKPEVAEAIGKRKANMIYATDADYLITVCPFCEYHIRDSLTKYL 472
            GG     +  V+  +GK KA    AT A Y +   P C  H+   + + L
Sbjct: 181 FGGTFAVDEGAVSAKMGKDKAQAHAATGATYAVGFDPSCLLHLDGMIRRQL 231