Pairwise Alignments

Query, 494 a.a., succinate dehydrogenase/fumarate reductase iron-sulfur subunit from Methanococcus maripaludis S2

Subject, 247 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.5 bits (197), Expect = 6e-20
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 21/223 (9%)

Query: 263 MRVAFFTGCLVDFRLQEIGKSAIRVLNAHGVSVIIPKNQVCCGSPFIRTGQTDISESLKK 322
           M++A F  CLV+  + ++  + + +L   G  VI+P  Q CCG P   +G  D + S   
Sbjct: 1   MKIALFIPCLVNQMMPDVAIATLELLEKLGHQVILPAGQTCCGQPMTNSGCFDAARSTTL 60

Query: 323 QNLEIFNKLNVDSVVTLCAGCGSTLKNDYKEKK---------FKVMDITEVLVKVGLID- 372
           + L  F  +  D++V   A C    K ++ E            K+ ++TE L  +  I  
Sbjct: 61  KLLNAFKGVECDAIVCPAASCLVAAKENFHEFDNSPEAQAVINKLYELTEFLHDIAPIPA 120

Query: 373 -YKPLDITVTYHDPCHLRRGQKV-----YLEPR-----KILESIPKLKFIEMEIPDQCCG 421
             KP    ++    CH  R   +      + PR      +L +I  +  +  +  D+CCG
Sbjct: 121 FNKPFAHKISLQLSCHGIRMLSLATPSEQMGPRFNKVEAVLANIAGIDIVYPDRRDECCG 180

Query: 422 AGGGVRSGKPEVAEAIGKRKANMIYATDADYLITVCPFCEYHI 464
            GG     +  V+  +GK KA    AT A Y++   P C  H+
Sbjct: 181 FGGTFAVDEGAVSAKMGKDKAQAHAATGAQYVVGFDPSCLLHL 223