Pairwise Alignments

Query, 494 a.a., succinate dehydrogenase/fumarate reductase iron-sulfur subunit from Methanococcus maripaludis S2

Subject, 422 a.a., iron-sulfur cluster-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  133 bits (334), Expect = 1e-35
 Identities = 102/399 (25%), Positives = 165/399 (41%), Gaps = 70/399 (17%)

Query: 137 CIDCLSCIAMCPARKYSNYPGPTLMRQLARFAFDPKDEIDREKEAFDENIYNCTTCGRCV 196
           C+ C  C A+CP    +         ++A      K+ +  + E   E +  C  CG C 
Sbjct: 12  CMKCGMCQAVCPVFAETMKEADVTRGKIALLENLAKEMVS-DPEGVQEKLNKCLLCGSCG 70

Query: 197 EVCPKEIDIVHNAVEKLREKTFKKGYNLDSHLEVRKNVLSQNRSVPKEKTSFLEE----- 251
             CP  + I+      LR +     Y   S   V+K +L    + PK   + L+      
Sbjct: 71  ANCPSGVKIMDIF---LRARCIVNSYMGLS--PVKKAILRGMLTNPKLFNALLDMGSVFQ 125

Query: 252 ----------------------VSDEYIVE------------------NEKMRVAFFTGC 271
                                 + D + V                      ++VAFF GC
Sbjct: 126 GLFTTKVNDLLGSSCSKILSPIIGDRHFVGLASKSLHSRIKSLDTPAGKSGVKVAFFPGC 185

Query: 272 LVDFRLQEIGKSAIRVLNAHGVSVIIPKNQVCCGSPFIRTGQTDISESLKKQNLEIFNKL 331
           L D     +  + ++V + HGV V +P+   CCG P + +G     + L K NL++F K 
Sbjct: 186 LGDKMFTSVADACLKVFSHHGVGVYMPEGMACCGIPSLASGDRVSYDKLVKLNLDLFAKG 245

Query: 332 NVDSVVTLCAGCGSTLKN-------DY--------KEKKFKVMDITEVLVKV----GLID 372
             D +VT CA C +T+K        DY        +E + K MD+   +V V       D
Sbjct: 246 KFDYLVTPCATCTATIKEIWPKMMGDYPFEMRKQIEELEKKTMDVNAFVVDVLGVTPAAD 305

Query: 373 YKPLDITVTYHDPCHLRRGQKVYLEPRKILESIPKLKFIEMEIPDQCCGAGGGVRSGKPE 432
               ++ VT+HD CH+++   V  +PR ++   PK   +EM   D+CCG+GG       +
Sbjct: 306 APKGNVKVTFHDSCHMKKSLGVTAQPRNLIRMNPKYDLVEMAECDRCCGSGGSFNLYHYD 365

Query: 433 VAEAIGKRKANMIYATDADYLITVCPFCEYHIRDSLTKY 471
           +++ IG+RK   I  + A  + T CP C   + D L+++
Sbjct: 366 LSKQIGERKRQNIVDSGAQVVSTGCPACMLQMTDMLSQH 404



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 180 EAFDENIYNCTTCGRCVEVCP------KEIDIVHNAVEKL 213
           +  D+++  C  CG C  VCP      KE D+    +  L
Sbjct: 3   QELDDHMVACMKCGMCQAVCPVFAETMKEADVTRGKIALL 42



 Score = 24.3 bits (51), Expect = 0.009
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 419 CCGAGGGVRSGKPEVAEAIGKRKANMIYATDADYLITVCPFCEYHIRDSLTKYLKEH 475
           CCG    + SG     + + K   ++      DYL+T C  C   I++   K + ++
Sbjct: 217 CCGIPS-LASGDRVSYDKLVKLNLDLFAKGKFDYLVTPCATCTATIKEIWPKMMGDY 272