Pairwise Alignments

Query, 476 a.a., cysteine--tRNA ligase from Methanococcus maripaludis S2

Subject, 459 a.a., cysteinyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  414 bits (1063), Expect = e-120
 Identities = 212/474 (44%), Positives = 292/474 (61%), Gaps = 17/474 (3%)

Query: 1   MLKVYNTLTRCEEEFKTLNEKEVKMYVCGPTVYDNTHLGHGRTYVSFDIIRRYLEHMGYT 60
           MLK+YN++TR ++EFK +N  +V MYVCG TVYD  H+GHGRT+VSFD+I RYL + GY 
Sbjct: 1   MLKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE 60

Query: 61  VNLVINFTDIDDKIIKRAYEKEKDPKEISEQFIKVFLDDMATLKVKPADIYPKVTEHISE 120
           VN   N TDIDDKIIKRA E ++D   ++++ I     D   L +K  D  P+ T HI+E
Sbjct: 61  VNFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMKRPDFEPRATLHIAE 120

Query: 121 IIAFIEKLIEKGFAYKTEDG-VYFEVKKFKNYGKLSNINLEDLVSGARIETSEKKKNQKD 179
           II  +E+L+ +G AY   DG V F V  F  YG+LS  NLE L +GAR+E  + K+N  D
Sbjct: 121 IIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMD 180

Query: 180 FALWKTAKPGEPKWESPFGSGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPHHENEIA 239
           F LWK +KPGEP WESP+G GRPGWHIECSAM+SK+LG  FDIHGGG DL FPHHENEIA
Sbjct: 181 FVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIA 240

Query: 240 QSSAYSGKDWVNYWLHTGFVMVNGEKMSKSLGNFVTIGDISKEYSPEILRFFFIQRHYRS 299
           QS       +VNYW+HTG VM++ EKMSKSLGNF TI D+   Y  E +R+F +  HYRS
Sbjct: 241 QSCCAHDTPYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLSHYDAETVRYFLLSGHYRS 300

Query: 300 PIDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRTWDENEFLLYDILKNSKNNFYNA 359
            I+Y+ E++   +  LE++Y  I+++ +++  +         EF+           F  A
Sbjct: 301 QINYSEENLKQARAALERLYTAIKDVDLTVAAA------PAEEFVA---------KFKAA 345

Query: 360 MNSDFNTVKALKSVFEVSNGVNKYLSLTKTPSEGLLLKALDFYKIIGEIFGLFENYFKES 419
           M+ DFNT +A   +F++   +N+        +  L +       ++G +    + +FK  
Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAEASALAVSMKQLADVLGLLHQSPDAFFKGE 405

Query: 420 SDSDEEEFVTFLIELRSDVRLQKNYEMSDKIRDGLKNLGYQIEDNPKEGTVFKK 473
              DE   +  LI  R+  R +K++  +D  R+ L  LG  +ED P  GT ++K
Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWPAADVARNRLNELGVVLEDGP-SGTTWRK 458