Pairwise Alignments

Query, 293 a.a., CoB--CoM heterodisulfide reductase subunit B from Methanococcus maripaludis S2

Subject, 247 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 27/245 (11%)

Query: 1   MKYAFFLGCIMPNRYAGVESATRTVMEKLGVELVDMPGASCCPAPGV-FGSFDQKTWLTL 59
           MK A F+ C++      V  AT  ++EKLG +++   G +CC  P    G FD+    TL
Sbjct: 1   MKIALFIPCLVNQMMPHVGIATVELLEKLGHQVILPKGQTCCGQPMTNSGCFDEAKKTTL 60

Query: 60  AARNLVIAEEMGTDIVTVCNGCYGSLYEAAHMLHENKEALAMVNEQLKEIGKEYKGTVHV 119
              N     E    IV     C  +  E  H   ++ EA A+++       K Y+ T  +
Sbjct: 61  KLLNAFKGVECDA-IVCPAASCLVAAKENFHEFDDSPEAQAVID-------KLYELTEFL 112

Query: 120 RHFAELIYKEIGVDKIRENVVKPLAVNIGVHYGCHFLK----PTAAKGLGNAEHPTMLDE 175
              A +               K     I +   CH ++     T ++ +G       ++ 
Sbjct: 113 HDVAPI-----------PAFNKAFNFKISLQLSCHGIRMLDLATPSEQMG--PRTNKVEA 159

Query: 176 LVEATGAKSVDYKDKM-MCCGAGGGVRAKELDLALSMTQEKIENMLAVGADATVNVCPFC 234
           ++       + Y D+   CCG GG     E  ++  M ++K +   A GA   V   P C
Sbjct: 160 VLSRIPGIEIVYPDRRDECCGFGGTFAVDEGAVSAKMGKDKAQAHAATGATYAVGFDPSC 219

Query: 235 QLQFD 239
            L  D
Sbjct: 220 LLHLD 224