Pairwise Alignments

Query, 293 a.a., CoB--CoM heterodisulfide reductase subunit B from Methanococcus maripaludis S2

Subject, 258 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 60.5 bits (145), Expect = 4e-14
 Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 29/272 (10%)

Query: 1   MKYAFFLGCIMPNRYAGVESATRTVMEKLGVELVDMPGASCCPAPGV-FGSFDQKTWLTL 59
           MK A F+ C++      V  AT  ++EKLG +++   G +CC  P    G FD     TL
Sbjct: 12  MKIALFIPCLVNQMMPDVAIATLELLEKLGHQVILPAGQTCCGQPMTNSGCFDAARSTTL 71

Query: 60  AARNLVIAEEMGTDIVTVCNGCYGSLYEAAHMLHENKEALAMVNEQLKEIGKEYKGTVHV 119
              N     E    IV     C  +  E  H    + EA A+++       K Y+ T  +
Sbjct: 72  KLLNAFKGVECDA-IVCPAASCLVAAKENFHEFDNSPEAQAVID-------KLYELTEFL 123

Query: 120 RHFAELIYKEIGVDKIRENVVKPLAVNIGVHYGCHFLKPTAAKGLGNAEHP--TMLDELV 177
              A +               KP A  I +   CH ++  +         P    ++ ++
Sbjct: 124 HDVAPI-----------PAFNKPFAHKISLQLSCHGIRMLSLATPSEQMGPRFNKVEAVL 172

Query: 178 EATGAKSVDYKDKM-MCCGAGGGVRAKELDLALSMTQEKIENMLAVGADATVNVCPFCQL 236
                  + Y D+   CCG GG     E  ++  M ++K +   A GA   V   P C L
Sbjct: 173 ANIAGIDIVYPDRRDECCGFGGTFAVDEGAVSAKMGKDKAQAHAATGAQYVVGFDPSCLL 232

Query: 237 QFDRGQVEIKEKLGNEYNFPVVHLSQLLGLAM 268
             D G +  +++L  E    + H++Q+L  A+
Sbjct: 233 HLD-GMIR-RQQLPIE----IRHIAQVLNAAL 258