Pairwise Alignments

Query, 462 a.a., V-type ATP synthase subunit B from Methanococcus maripaludis S2

Subject, 445 a.a., flagellum-specific ATP synthase FliI (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (353), Expect = 8e-38
 Identities = 107/353 (30%), Positives = 167/353 (47%), Gaps = 17/353 (4%)

Query: 79  GDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEEKLDINGYPLNPVSRNPPNAFVQTGVS 138
           G+ A + V   +LGR+ +G G PLDG   +  E++   +   +NP+SR      +  GV 
Sbjct: 93  GEQAGLNVGLSLLGRVLDGNGVPLDGLGALSTEQQAPRHSNAINPLSRRAITEPLDVGVR 152

Query: 139 TIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKVRGEGEQFAVVFAAMGITGEESNY 198
            I+   T+ +GQ++ +F+GSG+  + L   + R            +V   +G  G E   
Sbjct: 153 AINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD------IIVVGLVGERGREVKE 206

Query: 199 FMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVILTDLTNY 258
           F++E        ++VV    AD   + R+     +   AEY   + G +VL+++  LT Y
Sbjct: 207 FIEEILGEKGRARSVVVAAPADTSPLMRLRACETSTRIAEYFR-DLGYNVLLLMDSLTRY 265

Query: 259 CEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGKEGTVTQIPILTMPDDDITH 318
            +A REIA A  E P  +GYP  ++  L  L ERAG     +G++T    +    DD   
Sbjct: 266 AQAQREIALAVGEPPATKGYPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQD 325

Query: 319 PIPDLTGYITEGQIVLSRELNRKGVYPPVDILPSLSRLA----GNGQGEGKTRDDHSKVI 374
           PI D +  I +G IVLSR L   G YP +DI  S+SR+A     N   E   R   +  +
Sbjct: 326 PIADASRAILDGHIVLSRSLADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSL 385

Query: 375 SQ------AYAAYAEGRGLRDLVAVVGEEALTERDRSFLKFADAFENSIVTQG 421
            Q      +  AYA+G   R   A+  + A+    R  ++ A +F +S V  G
Sbjct: 386 YQQNKDLISIGAYAQGSDPRIDNAIRLQPAMNAFLRQTMRDAFSFADSQVMLG 438