Pairwise Alignments

Query, 586 a.a., ATP synthase subunit A from Methanococcus maripaludis S2

Subject, 438 a.a., type III secretion system ATPase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  111 bits (278), Expect = 5e-29
 Identities = 85/269 (31%), Positives = 118/269 (43%), Gaps = 21/269 (7%)

Query: 208 PLITGQRVEDTFFGLAKGGASAIPGPFGSGKTVTQHQLAKWSDVDVVVYIGCGERGNEMT 267
           P+  G RV D      +G    I    G GK+     + K    DV V    GERG E+ 
Sbjct: 144 PISLGLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVR 203

Query: 268 EVIEEFPHLDDIKTGNKLMDRTVLIANTSNMPVAAREASVYTGITIAEYFRDQGLGVLLT 327
           E IE          G +   + VL+ +TS+     R  + YT   IAEYFRDQ   VLL 
Sbjct: 204 EFIEH-------DLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLM 256

Query: 328 ADSTSRWAEAMREISGRLEEMPGEEGYPAYLSSKLAQFYERAGRVECLGSENKQGFVCIV 387
            DS +R+  A REI     E P   G+P  + S L +  ERAG        + +G +  +
Sbjct: 257 MDSVTRFGRAQREIGLAAGEPPTRRGFPPSVFSTLPRLMERAG-------NSDRGSITAL 309

Query: 388 GAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLTSYSLYIDDIAGWWQQ 447
             V   G D +EP+   T  I+     L   LA   H+PAI+   S S  ++ I G   +
Sbjct: 310 YTVLVEGDDMTEPIADETRSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHK 369

Query: 448 NTAADWRSLRDEAMSLLQKEAELQEIVQL 476
             A   R        +L K AE++ +VQ+
Sbjct: 370 GAAQKLR-------KILAKYAEVELLVQI 391



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 2   VVGKIIKISGPVV--VAEGMKGSQMFEVVKVGNE-GLTGEIIQLTEDEAIIQVYEETAGI 58
           V G++ ++ G ++  V  G+K  ++  +    ++  L  E++   +  A++       GI
Sbjct: 22  VRGRVEQVVGTIIRAVVPGVKVGELCLLRNPWDDWNLRAEVVGFVKHVALLTPLGNLQGI 81

Query: 59  KPGEGVEGTGAPLSVELGPGMLKAMYDGIQRPLN 92
            P   V  TG  LS+ +G  +L  + DG+  P++
Sbjct: 82  SPATEVIPTGEILSIPVGEDLLGRVLDGLGDPID 115