Pairwise Alignments

Query, 586 a.a., ATP synthase subunit A from Methanococcus maripaludis S2

Subject, 539 a.a., ATP synthase beta chain from Caulobacter crescentus NA1000

 Score =  110 bits (275), Expect = 1e-28
 Identities = 99/354 (27%), Positives = 166/354 (46%), Gaps = 29/354 (8%)

Query: 193 VRKPRPSKGKQAPVIP-LITGQRVEDTFFGLAKGGASAIPGPFGSGKTVTQHQLAK---- 247
           + +  PS  +Q      L+TG +V D      KGG   + G  G GKTVT  +L      
Sbjct: 172 IHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAK 231

Query: 248 -WSDVDVVVYIGCGER---GNEMT-EVIEEFPHLDD-IKTGNKLMDRTVLIANTSNMPVA 301
            +    V+   G GER   GN++  E+IE   ++D     G+    R  L+    N P  
Sbjct: 232 AYGGYSVLA--GVGERTREGNDLYHEMIESNVNVDPKANNGSTEGSRCALVYGQMNEPPG 289

Query: 302 AREASVYTGITIAEYFRD-QGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLSS 360
           AR     TG++IAEYFRD +G  VLL  D+  R+ +A  E+S  L  +P   GY   L++
Sbjct: 290 ARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLAT 349

Query: 361 KLAQFYERAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLA 420
           ++    ER      + S NK G +  V A+  P  D ++P  + +   +     L  ++A
Sbjct: 350 EMGNLQER------ITSTNK-GSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRDIA 402

Query: 421 RRRHFPAINWLTSYSLYIDDIAGWWQQNTAADWRSLRDEAMSLLQKEAELQEIVQLVGPD 480
            +  FPA++ L S S  +D +    +  T A           +LQ+   L++I+ ++G D
Sbjct: 403 AQAIFPAVDPLDSTSRIMDPLVIGEEHYTVA------RRVQEVLQQYKALKDIIAILGMD 456

Query: 481 ALPDRERVILEIARMLREDFLQQDAYHEVDSYCSPLKQYNMLKIIMTFYKKGLD 534
            L + +++++  AR ++  FL Q  +H  + + +    +  LK  +  +K  +D
Sbjct: 457 ELSEEDKLVVARARKIQR-FLSQ-PFHVAEQFTNTPGAFVQLKDTIRSFKGIVD 508



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 24/162 (14%)

Query: 4   GKIIKISGPVVVAE--GMKGSQMFEVVKVGN---EGLTGEIIQLTEDEAIIQV-YEETAG 57
           G++++I G VV  E  G   + +  V  V     + L  E+ Q      +  +  + T G
Sbjct: 65  GRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEG 124

Query: 58  IKPGEGVEGTGAPLSVELGPGMLKAMYDGIQRPLNEIENATDSIYIPRGVSVPSISREIK 117
           +  G+ V  TG P+ V +GPG L  + + I  P++E           +G     ISR I 
Sbjct: 125 LVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDE-----------QGPIRSDISRTIH 173

Query: 118 WDFEPTAAAGDEVITGDVIGTVQETASIVHKIMIPFGVSGKI 159
            D     +  ++  T +V+     T   V  +M P+   GKI
Sbjct: 174 RD---APSFAEQTNTAEVL----VTGIKVIDLMCPYTKGGKI 208