Pairwise Alignments

Query, 268 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 297 a.a., hflC protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.1 bits (196), Expect = 5e-20
 Identities = 62/279 (22%), Positives = 131/279 (46%), Gaps = 28/279 (10%)

Query: 5   LNLLLGIFLLVLIIKSVIIVNQFELGLIFRLGK-----VRGR-----LNPGVNFIIPFID 54
           L+++L   +L + + SV++VN+ E  ++ R G+     V G+      +PG++F +P ID
Sbjct: 4   LSIVLIAVILGIGLSSVMVVNEGERAIVARFGEIVKDNVDGKQVTRVFSPGLHFKVPVID 63

Query: 55  VPIKVDVRTKVIDVPPQEMITRDNAGVRIDAVIYYRVMDVNRAILEVQ-----NFQYAII 109
               +D R + +D      +T +   + +D+ + +R+ D  +  L        N +  + 
Sbjct: 64  KVKLLDARIQTLDGAADRFVTSEKKDLMVDSYVKWRIFDFEKYYLSTNGGIKSNAETLLQ 123

Query: 110 NLAQTSLRAIIGSLELDDALN-KREFINSQLLETLDRDTDAWGVKVEKVELREIEPPTDI 168
                 LR   G   + + ++ +R+ + +  L          G++V  V +++I  P ++
Sbjct: 124 RKINNDLRTEFGRRTIKEIVSGQRDELQNNALANAAESAKDLGIEVVDVRVKQINLPANV 183

Query: 169 KNAMTQQMKAERLKRAAILEAEGEKQSKILK-----------AQGTAESMKIEAEGQAKA 217
            N++ Q+M+AER   A    A+G++QS+I++           A+   +++ I  EG A A
Sbjct: 184 SNSIYQRMRAERQAVAKEHRAQGKEQSEIIRATIDANVTVKIAEAERKALTIRGEGDALA 243

Query: 218 IQIVAESAQNYFKNEAQLYKALDVTSNTLKDNTKFVISE 256
            +I ++ A N         ++LD    +   N+  ++ E
Sbjct: 244 AKIYSD-AYNKDPEFFSFMRSLDAYRASFSGNSDIMVLE 281