Pairwise Alignments

Query, 268 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 297 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score = 73.2 bits (178), Expect = 6e-18
 Identities = 73/288 (25%), Positives = 140/288 (48%), Gaps = 38/288 (13%)

Query: 6   NLLLGIFLLVLIIKSVIIVNQFELGLIFRLGKVRGRLN-PGVNFIIP--FIDVPIKVDVR 62
           ++++ +  + L   ++ +V+Q    ++F LG+V+  +  PG++F +P  F +V + +D R
Sbjct: 7   SVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNV-MYLDKR 65

Query: 63  TKVIDVPPQE-MITRDNAGVRIDAVIYYRVMDVNRAILEVQNFQYAIINLAQTSLRAIIG 121
            + +D P  +  IT +   V +DA + +R++D     +       A     Q  L  I+ 
Sbjct: 66  IQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFG----ADERRTQDRLSQIVK 121

Query: 122 SLELDDALNKR---EFINSQLLETLD-------RDTDAWGVKVEKVELREIEPPTDIKNA 171
           +  L+D + KR   E I+SQ    +D        +    GV+V  V LR ++    I N+
Sbjct: 122 AA-LNDEITKRTVREVISSQRNNVMDAIQARVANEAKQIGVEVIDVRLRRVDYVDQINNS 180

Query: 172 MTQQMKAERLKRAAIL-----------EAEGEKQSKILKAQGTAESMKIEAEGQAKAIQI 220
           + ++MK+ER++ A  L            A+ ++Q  ++ A+   ES KI   G +KA QI
Sbjct: 181 VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRESEKIRGAGDSKASQI 240

Query: 221 VAES-AQN--YFKNEAQLYKALDVTSNTLKDNTKFVISENIMDVAKKF 265
            A++  QN  +FK     Y++L+    + K+    ++ +   +  K F
Sbjct: 241 YAQAFGQNPEFFK----FYRSLEAYRASFKNRHDVMVVDPSSEFFKYF 284