Pairwise Alignments

Query, 642 a.a., OB-fold nucleic acid binding domain-containing protein from Methanococcus maripaludis S2

Subject, 303 a.a., DNA-binding protein from Methanococcus maripaludis JJ

 Score = 61.6 bits (148), Expect = 5e-14
 Identities = 66/292 (22%), Positives = 128/292 (43%), Gaps = 40/292 (13%)

Query: 374 SELKKDESASKKILEEITEIK--DILNGSAENSDVTVVAMVTNAYPVNEFQRSSGGTGKV 431
           SE  ++   +KK +++I  IK  DI+    E + +  +  +        F+        V
Sbjct: 15  SEKLENTPENKKNIKDIDTIKLSDIIEKMIEINSIVRIEKI--------FEEKIVSNNPV 66

Query: 432 RNIMLEDGTGSIRMALWDS--DAETEISEGDVVKLIHGYA-KESGEYMDLSTGRFGRI-- 486
            N+++ DG     ++LW    D    ++EGD + + + +A K+  + + L+  + G+I  
Sbjct: 67  VNVVVNDGFARGLLSLWSEQIDLLNGLNEGDAILIENAHAPKKYKDRIHLALSKSGKISK 126

Query: 487 ---EVNPKGVSIKSP--------RNYIADLEEGVSTEISGTIVDYRKQDVILNLCPNCRK 535
              ++   G  +K          R  I++L+EG+  E+ G IV    ++    +C  C K
Sbjct: 127 IESDLPAIGELLKKSNAQRNDFSRKSISELKEGMGAELRGLIVAIHSKEPYFPVCDKCNK 186

Query: 536 RLNLVDNKYLCEVCGEVEPNE-----LLVSNLTVDDGTGVINCRVYGSNVEKVTELSKNK 590
           ++ L  +  +C+   +V+  +     L +   T+DDG G I  RV  +N     +  + K
Sbjct: 187 KMTLKKDYAVCKCGNKVDEEDKNLKWLFLCTCTLDDGFGTI--RVTLNNNTNYLDFEELK 244

Query: 591 LKEMNMDALADV-----LGKDVLFYGTPSFRN--DDLDFAVKRVNFVDVSKE 635
              ++ + + DV     LG D+L  G   +     D  F     N +D+ +E
Sbjct: 245 KIIIDDEEILDVLNNKLLGLDILTSGFTIYDEYLKDTAFRCNNWNKIDIMEE 296



 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 52/257 (20%)

Query: 63  SIKDIADGQKNVEVTGKIIEISPA----KDFNRKDGSTGKLASVTIGDNTGITRLTLWND 118
           +IKDI D  K  ++  K+IEI+      K F  K  S   + +V + D      L+LW++
Sbjct: 27  NIKDI-DTIKLSDIIEKMIEINSIVRIEKIFEEKIVSNNPVVNVVVNDGFARGLLSLWSE 85

Query: 119 KTDLIEGLKKGDVVKIENAFS-RKWNDKVEL---NSGSELSIEK--------LKKYDESR 166
           + DL+ GL +GD + IENA + +K+ D++ L    SG    IE         LKK +  R
Sbjct: 86  QIDLLNGLNEGDAILIENAHAPKKYKDRIHLALSKSGKISKIESDLPAIGELLKKSNAQR 145

Query: 167 YPILKDNYKISELMPNLSGTINAEVVTAYPKKEF-----------------------SRK 203
               + +  ISEL   +   +   +V  + K+ +                       ++ 
Sbjct: 146 NDFSRKS--ISELKEGMGAELRGLIVAIHSKEPYFPVCDKCNKKMTLKKDYAVCKCGNKV 203

Query: 204 DGTKGQLKSLF-----LKDDTGSIRGTLWN--ELADFEVKKG---DIAEVSGYVKQGYSG 253
           D     LK LF     L D  G+IR TL N     DFE  K    D  E+   +     G
Sbjct: 204 DEEDKNLKWLFLCTCTLDDGFGTIRVTLNNNTNYLDFEELKKIIIDDEEILDVLNNKLLG 263

Query: 254 LEISVDNIGIIEKSVKE 270
           L+I      I ++ +K+
Sbjct: 264 LDILTSGFTIYDEYLKD 280



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 254 LEISVDNIGIIEKSVKEEKPVEKLSISELTSFDGEYVTVSGNIVNISGSREVQFSDRTAE 313
           L+  ++N   +E + + +K ++ +   +L+    + + ++ +IV I    E +       
Sbjct: 8   LDDILENSEKLENTPENKKNIKDIDTIKLSDIIEKMIEIN-SIVRIEKIFEEKIVSNNPV 66

Query: 314 VQDIYINDGTGMVKTAFWGTNRSILDGLKEGDYVTISNAKL-RTYTDNTGEKRADLTYNY 372
           V ++ +NDG      + W     +L+GL EGD + I NA   + Y D     R  L  + 
Sbjct: 67  V-NVVVNDGFARGLLSLWSEQIDLLNGLNEGDAILIENAHAPKKYKD-----RIHLALSK 120

Query: 373 MSELKKDES 381
             ++ K ES
Sbjct: 121 SGKISKIES 129