Pairwise Alignments

Query, 388 a.a., MMPL family transporter from Methanococcus maripaludis S2

Subject, 768 a.a., adhesin-associated MmpL efflux pump (from data) from Shewanella amazonensis SB2B

 Score = 78.2 bits (191), Expect = 8e-19
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 28/289 (9%)

Query: 96  LDLVDFLEQDIGSMDMITSVSSRADILKAYNN---------DVIPNDVATVKTIYQNLPE 146
           L+ +   E  +G+   + S +S A I +  N          +V+P + +++      +P 
Sbjct: 484 LERIGEFEWQVGNTPGVESTASLASIARKVNAGFNEGNPKWEVLPRNTSSLVQAVGQIPT 543

Query: 147 SSRDGIFNNDYSMVVVYA--------TTDAGTDDKKILVKDINSRLDEAPIPPG-VEVIT 197
           +S  G+ N D S++ VY         T +A     K +  ++N+   +  +  G V V+ 
Sbjct: 544 TS--GLLNGDCSVMPVYLFLKDHKAETIEAVVAKVKAVSAELNTDKIQFKLASGPVGVMA 601

Query: 198 TGTPALSELLKRMMDESQAVTGLASLLAIFTILLLYFRNIVKSVLPLIPVVVAVIWAAGS 257
               A++E    MM        L    A+F + L+ FR++  ++  ++P+ V    A   
Sbjct: 602 ATNEAVAEAQTPMM--------LYVYGAVFVLCLVSFRSLRATIAVILPLYVVSTLAQAL 653

Query: 258 MAIFKIPMDTATSVMGSLLLGLGIDYGVHLFHRYEEELGDGKSMDEAINIAVVSTGSAVL 317
           M   +I +  +T  + +L +G+G+DYG+++      +L DG ++ +A   A+   GSAV+
Sbjct: 654 MTKLEIGLAVSTLPVIALGVGIGVDYGIYILSTMAVKLRDGMAVQQAYLEALQERGSAVI 713

Query: 318 VTTATTMAGFAALTIAPLSMMANMGKVCTLGIFFCMAAVICLLPPLIVI 366
            T  T   G +    + L    +MG + T      M   I +LP L  +
Sbjct: 714 FTGLTLAIGVSTWFFSALKFQMDMGILLTFMFLVNMLGAIIILPALTAV 762



 Score = 63.5 bits (153), Expect = 2e-14
 Identities = 79/376 (21%), Positives = 165/376 (43%), Gaps = 24/376 (6%)

Query: 16  RHPLKVVAVVIVLTIFMAFLATGIESQTDYEKMVPQDDPVIVALNEIRDEFGGTETIMLG 75
           RH   V+++ ++LT F+ + A+ ++    + K +P +   +    + + +FGG  +IM+ 
Sbjct: 15  RHRGWVISIFVLLTAFLGYQASQLKMDAAFVKNIPLNHSYMQTYLKHQKDFGGANSIMVA 74

Query: 76  VKLVPSDSSEKVTDIRDPRVLDLVDFLEQ-DIGSMDMITSVSSR-ADILKA--YNNDVIP 131
           V+    +    V       V D + F+   +   +  + S S+R  ++++       VIP
Sbjct: 75  VEDTSGNIFNPVFFDALKNVHDQLFFIPGIERSQVKSLFSPSTRFTEVVEDGFAGGPVIP 134

Query: 132 ----NDVATVKTIYQNLPESSRDG-IFNNDYSMVVVYATT---DAGTDDKKILVKDINSR 183
               ND   +  +  N+ ++   G +   DYS  +V A     D  T +    +      
Sbjct: 135 ADYVNDDIGLAVVRDNIEKAGIVGRLIAEDYSAAMVSAQLMDFDPQTGEPLDTIALAAKL 194

Query: 184 LDEAPIPPGVEVITTGTPALSELLKRMMDESQAVTGLASLLAIF---TILLLYFRNIVKS 240
            +E       + I       +++   + D ++ V  L  L+AI     ++ L+ R++V +
Sbjct: 195 ENELRGKYETDTIKVHIIGFAKMAGDVADGAKGVL-LFFLIAIAITAVMVFLFSRSLVLT 253

Query: 241 VLPLIPVVVAVIWAAGSMAIFKIPMDTATSVMGSLLLGLGIDYGVHLFHRYEEELGDGKS 300
           +LPL   ++AV+W  G + +    +D  + ++  L+  +G+ +GV + +   + + DG+ 
Sbjct: 254 LLPLSCSLIAVVWQLGLLTVVGFGLDPMSILVPFLVFAIGVSHGVQIINAVRQRVLDGQQ 313

Query: 301 MDEAINIA----VVSTGSAVLVTTATTMAGFAALTIAPLSMMANMGKVCTLGIFFCMAAV 356
              A   A    +V  G A+L  T     GF  L    + ++  +    +LG+   +   
Sbjct: 314 TKAAAASAFRSLLVPGGVALLSDT----VGFITLLAIDIGIIRELAISASLGVAVIIFTN 369

Query: 357 ICLLPPLIVIEERYTR 372
           + LLP +I   E  T+
Sbjct: 370 LILLPIVISFFEIKTK 385