Pairwise Alignments

Query, 523 a.a., COG1361 S-layer family protein from Methanococcus maripaludis S2

Subject, 410 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  236 bits (602), Expect = 1e-66
 Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 24/368 (6%)

Query: 13  LLSILATAVSALEIDEPQY----------NPNVIHPGDDVDVWIDVANDEGSDEIIEDLR 62
           L+  L T+  AL +D+PQY          NPNVIHPGDDV++WI V ND   D+ ++D++
Sbjct: 12  LVFALLTSSYALSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDN-YDKQLKDIK 70

Query: 63  ISVESNYPFEVKQVNPTKGVYEISQLNEGESDTAYFKLRINDDASSRDYRLDVTVSYDIV 122
           + +  +YPFE+KQVNP  GV EIS LNEGESDTAYFK+ ++++A S +YR+DVTV+    
Sbjct: 71  VEISPHYPFEIKQVNPETGVAEISHLNEGESDTAYFKIHVSENAPSDEYRIDVTVT--AT 128

Query: 123 EYD-GDDRQVISKSYTKIYYIPVYGLANFEIN-SDGVTLTPAKTENVQIKVTNKGTGTAK 180
           EY+ GD+     K+ TKIYY+P+YG+A FEIN  D   + P+++E +++ + N+GTGTAK
Sbjct: 129 EYELGDEPNEREKTLTKIYYVPIYGIAKFEINLDDNNPINPSESEELEVYIKNQGTGTAK 188

Query: 181 EATLTIGSNNLINPIDTTKFYLGSLSPDITKLLSLNLHASGDATEGSYLIPATLSWIDSD 240
             TL +   + +N +  T FYL SLSP   KL++++ +A     +G Y I A + WI  D
Sbjct: 189 YLTLNLAGTSDLNIVGPTTFYLESLSPQTQKLITVDAYAIPTTEDGIYSINANIEWIGED 248

Query: 241 GTENSEVINIGFIVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGHGEAKNIEIDL 300
           G E +  I I   V+  I      +  D   +KA     ++ + L N G  + K+  +++
Sbjct: 249 GAEYTSSIPINLKVKSTIFDNQPFLYLD--GVKAISGGQEVTIALANRGTSKLKHCVLEI 306

Query: 301 LSEYPFKDSWSNSNFKNIGTLTSGDTKTATFYIDVDKDAEAKHYAVPLNITYMDIFDEEH 360
                  D++     + IG L   D+ +  + ++V  D++     +   +TY + + EE 
Sbjct: 307 DGAVELNDNY----IRYIGDLEEDDSDSGIYELEVFGDSKTN---ITATLTYFNEYHEEF 359

Query: 361 SEMEYIDL 368
           +  +  +L
Sbjct: 360 TITQEFEL 367



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 88/414 (21%), Positives = 161/414 (38%), Gaps = 43/414 (10%)

Query: 131 VISKSYTKIYYIPVYGLANFEINSDGVTLT-PAKTENVQIKVTNKGTGTA-KEATLTIGS 188
           +++ SY      P Y + N E       +  P    N+ IKV N       K+  + I  
Sbjct: 16  LLTSSYALSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDNYDKQLKDIKVEISP 75

Query: 189 N-----NLINPIDTTKFYLGSLSPDITKLLSLNLHASGDATEGSYLIPATLSWIDSD-GT 242
           +       +NP +T    +  L+   +      +H S +A    Y I  T++  + + G 
Sbjct: 76  HYPFEIKQVNP-ETGVAEISHLNEGESDTAYFKIHVSENAPSDEYRIDVTVTATEYELGD 134

Query: 243 ENSE---------VINIGFIVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGHGEA 293
           E +E          + I  I + +INL  +N I +P+E +  E Y+K      N G G A
Sbjct: 135 EPNEREKTLTKIYYVPIYGIAKFEINLDDNNPI-NPSESEELEVYIK------NQGTGTA 187

Query: 294 KNIEIDLLSEYPFKDSWSNSNFKNIGTLTSGDTKTATFYIDVDKDAEAKHYAVPLNITYM 353
           K + ++L            + +  + +L+    K  T         E   Y++  NI ++
Sbjct: 188 KYLTLNLAGTSDLNIVGPTTFY--LESLSPQTQKLITVDAYAIPTTEDGIYSINANIEWI 245

Query: 354 DIFDEEHSEMEYIDLYIKPKPVLEILPETY-----TLKAGDENTITLTLQNTGSEKAQSV 408
                E++    I+L +K   + +  P  Y      +  G E TI L  + T   K   +
Sbjct: 246 GEDGAEYTSSIPINLKVK-STIFDNQPFLYLDGVKAISGGQEVTIALANRGTSKLKHCVL 304

Query: 409 KIT-AIKNTAQPFEYTQKTDSIGTLDTNETGEGQLIIDVDSDAANKEYLITVEVRSVGDS 467
           +I  A++       Y      IG L+ +++  G   ++V  D+               + 
Sbjct: 305 EIDGAVELNDNYIRY------IGDLEEDDSDSGIYELEVFGDSKTNITATLTYFNEYHEE 358

Query: 468 EEGDDNVYISQKTIRVNVEGGSNSTLVYLVVLLLVGGLGYYMYLKRKKDKVTEK 521
                   +     +V  EG +N T + L+++L V  + Y +Y + KK K +E+
Sbjct: 359 FTITQEFELDPANSQVKQEG-TNYTFIGLIIVLAV--VAYILYRRWKKRKDSEE 409