Pairwise Alignments

Query, 413 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 868 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 45.1 bits (105), Expect = 9e-09
 Identities = 53/272 (19%), Positives = 116/272 (42%), Gaps = 30/272 (11%)

Query: 5   VIDIATKDVVTVSPDTPISKAVGTMENKKFHN-LIVEKDDDIYLVTMHDLLLGN-----S 58
           +  I   +++  +P T +++A G M   +  + L+VE  +   + T  D L  N     S
Sbjct: 7   ISQILRHELLECAPQTTVAEAAGRMHQARCGSILVVELGEVRGIWTERDALALNFSDPES 66

Query: 59  VHQQVEDLMFRPF-CVKMNTQVIDAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAA 117
           +H  V  +M  P   V+    V +AA        R   V+D + + +GI++  D++    
Sbjct: 67  IHLPVSRVMSTPVKTVRETDTVAEAAIRFKQERLRHLLVVDRDGRRLGIVSQTDIVNHQG 126

Query: 118 ESELLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDI 177
               +    +  ++  +P+ +     + +A   + +      IV + +G  +G++T  D+
Sbjct: 127 VEFYVHMRDVGSVLKSAPLQVPGSMPVAEAVQRLREARSDAAIV-EHNGH-LGILTGRDV 184

Query: 178 VKKVFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGI 237
           ++ + +     + GE               +   PLIT     ++    +I   + IR +
Sbjct: 185 LRLIGQESLNCSAGE---------------VATFPLITVPRSSTLYHTRKIFNDRRIRHL 229

Query: 238 PIF-KNDTLRGIVTRLDIL-----KYLRDLRA 263
            +  ++  + G+++  DIL     +Y+ +LRA
Sbjct: 230 GVMDEHGRITGLLSYADILDSVEQEYVAELRA 261



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 124 DVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDIVKKVFK 183
           D+ I +I+    +      ++ +A   M +   G ++V+++ G+  G+ TE D +   F 
Sbjct: 4   DLPISQILRHELLECAPQTTVAEAAGRMHQARCGSILVVEL-GEVRGIWTERDALALNFS 62

Query: 184 PKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIFKND 243
               + +             PVS +++ P+ T    D+VAE A   +Q+ +R + +   D
Sbjct: 63  DPESIHL-------------PVSRVMSTPVKTVRETDTVAEAAIRFKQERLRHLLVVDRD 109

Query: 244 TLR-GIVTRLDILKY 257
             R GIV++ DI+ +
Sbjct: 110 GRRLGIVSQTDIVNH 124



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 19  DTPISKAVGTMENKKFHNLIVEKDDD-IYLVTMHDLLLGNSVHQQVED------LMFRPF 71
           DT    A+   + +  H L+V++D   + +V+  D++    V   V        L   P 
Sbjct: 86  DTVAEAAIRFKQERLRHLLVVDRDGRRLGIVSQTDIVNHQGVEFYVHMRDVGSVLKSAPL 145

Query: 72  CVKMNTQVIDAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESELLKDVKIDKIM 131
            V  +  V +A  + +   +  A +++ N  L GI+T  DV++   +  L  +    ++ 
Sbjct: 146 QVPGSMPVAEAV-QRLREARSDAAIVEHNGHL-GILTGRDVLRLIGQESL--NCSAGEVA 201

Query: 132 TKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDI---VKKVFKPKTKM 188
           T   +T+    ++   R +     I  L V+D  G+  G+++  DI   V++ +  + + 
Sbjct: 202 TFPLITVPRSSTLYHTRKIFNDRRIRHLGVMDEHGRITGLLSYADILDSVEQEYVAELRA 261

Query: 189 TVGE------------LTGNKVPRMAQPVSMIINKPLITANIGDSVAEV 225
            + E            L  +KV   +Q   MI+N   I  +I  + + +
Sbjct: 262 ALQEQSQRLQQSRHALLLASKVAESSQQAIMIVNAERIIQSINPAFSAI 310