Pairwise Alignments

Query, 413 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

Subject, 136 a.a., putative signal transduction protein with CBS domains (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 53.1 bits (126), Expect = 4e-12
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 63  VEDLMFRP-FCVKMNTQVIDAAFEMINSGQRVAPVIDENDKLIGIITDYD-VMKCAAESE 120
           V  +M +P   V     V  AA  M N       V+D+  + +GI+TD D V++ AA++ 
Sbjct: 3   VSRIMRKPVMTVAPEASVQTAAALMANLDIGALAVVDDG-RPVGILTDRDIVVRHAAKAG 61

Query: 121 LLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDIVKK 180
              D  +  +MT   VT   D++I +A  LM    I RL+VLD D + +G+++  DI   
Sbjct: 62  T--DALVGTVMTPCVVTCRSDQTIERAAHLMADRQIRRLVVLDADNRVVGLLSLGDIAND 119

Query: 181 VFKPKTKMTVGEL 193
             +     T+GE+
Sbjct: 120 ASEELAGQTLGEI 132



 Score = 26.9 bits (58), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 205 VSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIFKNDTLRGIVTRLDIL 255
           VS I+ KP++T     SV   A ++   DI  + +  +    GI+T  DI+
Sbjct: 3   VSRIMRKPVMTVAPEASVQTAAALMANLDIGALAVVDDGRPVGILTDRDIV 53



 Score = 22.3 bits (46), Expect = 0.008
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 8   IATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVHQQVEDL 66
           + T  VVT   D  I +A   M +++   L+V  D D  +V +  L LG+  +   E+L
Sbjct: 69  VMTPCVVTCRSDQTIERAAHLMADRQIRRLVV-LDADNRVVGL--LSLGDIANDASEEL 124