Pairwise Alignments

Query, 1081 a.a., carbamoyl-phosphate synthase large subunit from Methanococcus maripaludis S2

Subject, 1073 a.a., carbamoyl phosphate synthase large subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1061 bits (2745), Expect = 0.0
 Identities = 551/1082 (50%), Positives = 757/1082 (69%), Gaps = 21/1082 (1%)

Query: 2    KREDIKKVMILGSGPIVIGQAAEFDFSGSQACKSLKEEGIYTILVNSNPATIQTDTNIAD 61
            KR DIK ++ILG+GPIVIGQA EFD+SG+QACK+L+EEG   ILVNSNPATI TD  +AD
Sbjct: 3    KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMAD 62

Query: 62   KVYLEPLNPKILEKIIEKEQPDAILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTESV 121
              Y+EP++ +++  II KE+PDAILPTMGGQT LN A+ L   G+L +  V+++G+T   
Sbjct: 63   ATYIEPIHWEVVRNIIAKERPDAILPTMGGQTALNCALRLEAEGVLAEFNVDMIGATADA 122

Query: 122  IETSEDRDLFNKAMEEINQPIAKSAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIA 181
            I+ +EDR  F+ AM++I     ++    S+E+A    +++G+P I+RP+FT+GG+GGGIA
Sbjct: 123  IDKAEDRSRFDAAMKKIGLECPRAGIARSMEDAYEVLEQVGFPCIIRPSFTMGGSGGGIA 182

Query: 182  NNEEELIEITKKGLKYSMIKQVLIDQSLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMGI 241
             N+EE  EI  +GL+ S   ++LID+SL+GWKEYE EV+RD+ND  I+VC++EN DPMG+
Sbjct: 183  YNKEEFEEICSQGLELSPTNELLIDESLIGWKEYEMEVVRDRNDNSIIVCSIENFDPMGV 242

Query: 242  HTGESIVTAPSQTLSDEFHQKLRDASLQIIRHLKIE-GGCNVQFAVNPEMTDYVVIEVNP 300
            HTG+SI  AP+QTL+D+ +Q +R+ASL ++R + +E GG NVQF +NP+    V+IE+NP
Sbjct: 243  HTGDSITVAPAQTLTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302

Query: 301  RVSRSSALASKATGYPIAKIAAKIAIGRTLDEIQNDVTK-ETPASFEPTIDYVVVKIPRW 359
            RVSRSSALASKATG+PIAKIAAK+A+G TLDE+ ND+T   TPASFEP IDYVV K+PR+
Sbjct: 303  RVSRSSALASKATGFPIAKIAAKLAVGFTLDELSNDITGGATPASFEPAIDYVVTKVPRF 362

Query: 360  PFDKFRTVDKKLGTSMKSTGEIMAIGRNLEEALQKAVRSLDIGRFGI--IADGKDKEYSN 417
             F+KF   + +L T MKS GE+MAIGR  +E+LQKA+R L++G  G+  I D +D + + 
Sbjct: 363  NFEKFAGANDRLTTQMKSVGEVMAIGRTFQESLQKALRGLEVGVNGLDPIVDVEDND-AL 421

Query: 418  SEIVDILEHATDERLFVIAYALDKGWSVDGICERTGINPFFIEKIKKIIDCKKELEVISR 477
            S I   L+    ER++ IA A   G S+D I + T I+P+F+ +I++++  + +++    
Sbjct: 422  SRIRHELKEPGAERIWYIADAFRAGLSLDAIFKLTNIDPWFLVQIEELLSLENQVKEAGM 481

Query: 478  IPVDDEKLKEILLKAKSLGFSDVQISKIFSKTENEIRDLRKRLEVIPVYKMVDTCAAEFE 537
              +D    K+ L K K  GFSD +++ +   +E+E+R LR R EV PVYK VDTCAAEF 
Sbjct: 482  ASMD----KDFLYKLKRKGFSDARLAALMGVSESEMRKLRYRHEVYPVYKRVDTCAAEFS 537

Query: 538  AKTPYYYSAYERYFDEEQNESVSSDRKKVIILGSGPIRIGQGVEFDYSTVHAIFALKELG 597
              T Y YS YE     E+ E+  S+R K+++LG GP RIGQG+EFDY  VHA  AL+E G
Sbjct: 538  TDTAYMYSTYE-----EECEANPSNRDKIMVLGGGPNRIGQGIEFDYCCVHAALALREDG 592

Query: 598  IEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFGGQTAIN 657
             E I+VN NPETVSTDYDTSD+LYFE +  E+++ I+  E    Q  GVIVQ+GGQT + 
Sbjct: 593  YETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIE----QPKGVIVQYGGQTPLK 648

Query: 658  LAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALKVVERIG 717
            LA  L  +GV I+GTSP +ID AEDR++F   +++L++ Q +  T  + E A+   ERIG
Sbjct: 649  LARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVISAERIG 708

Query: 718  YPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVDVDAVCD 777
            YP +VRPSYVLGGRAM+IVY+ +DL+ Y  EAV VS+  P+L+D FL+ A EVD+DAVCD
Sbjct: 709  YPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDHFLDNATEVDIDAVCD 768

Query: 778  GESVFIGAIMEHIEEAGIHSGDSACVIPPQTLSKEVIEKIAEHTTKLALELGVIGLLNIQ 837
            G +V +GAIMEHIE+AG+HSGDS C +PP TLS+E+ +++ E   KLA+ELGV+GL+N+Q
Sbjct: 769  GTTVVVGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDQMREQVRKLAMELGVVGLMNVQ 828

Query: 838  YAVKDGVVYIIEANPRASRTIPYVSKSVGVPLAKIATNAIMGKKLKEMGYFGLAKSKYVS 897
            +AV+D  +Y+IE NPRA+RT+P+VSK+ GVPLAKIA   + G+ L+E G+       + S
Sbjct: 829  FAVQDNTIYMIEVNPRAARTVPFVSKATGVPLAKIAARVMAGQSLEEQGFTKEVIPPFYS 888

Query: 898  VKEAVFPFLKLPGVDPVLSPEMKSTGEAIGIDQDFGKAFYKSQLSANMELPTSGTVFISV 957
            VKE V PF K PGVDP+L PEM+STGE +G+   F +A+ K++L A  E+P SG   +SV
Sbjct: 889  VKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGATFAEAYAKAELGATSEVPKSGRALLSV 948

Query: 958  RNRDKDNITKIAKKYHNLGFEIVATRGTARELRLFDIPVREVRKISESMQNSVLDLMQKG 1017
            RN DK  +  +A K   LG+EI AT GTA  L    I  R V K+ E   + +LD ++  
Sbjct: 949  RNSDKKRVADLAAKLIELGYEIDATHGTAVVLGEAGINPRLVNKVHEGRPH-ILDRIKND 1007

Query: 1018 EVDLIINTSSGDKAKTDGYFIRRAAVELNIPCMTTLQGAYAAIKAIEAIKSGELGVYSLN 1077
            E   I+NT+ G +A  D   +RR A+   +   TTL  A+A   A  A       V S+ 
Sbjct: 1008 EYTYIVNTTEGRQAIEDSRQLRRGALRYKVNYTTTLNAAFATCMAHSA--DSRTNVTSVQ 1065

Query: 1078 EL 1079
            EL
Sbjct: 1066 EL 1067