Pairwise Alignments
Query, 1081 a.a., carbamoyl-phosphate synthase large subunit from Methanococcus maripaludis S2
Subject, 1077 a.a., carbamoyl-phosphate synthase, large subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Score = 1127 bits (2915), Expect = 0.0
Identities = 569/1081 (52%), Positives = 780/1081 (72%), Gaps = 14/1081 (1%)
Query: 2 KREDIKKVMILGSGPIVIGQAAEFDFSGSQACKSLKEEGIYTILVNSNPATIQTDTNIAD 61
KR D+K++M++GSGPI+IGQA EFD+SG+QA K+LKEEG +LVNSNPATI TD +AD
Sbjct: 3 KRTDLKRIMVIGSGPIIIGQACEFDYSGTQAVKALKEEGYEVVLVNSNPATIMTDPGLAD 62
Query: 62 KVYLEPLNPKILEKIIEKEQPDAILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTESV 121
+ Y+EP+ P+ + II KE+PDA+LPT+GGQTGLN A+ L+ G+L++ GVEL+G+ +V
Sbjct: 63 RTYIEPIEPETVAAIIRKERPDALLPTLGGQTGLNTALALAASGVLDECGVELIGANRAV 122
Query: 122 IETSEDRDLFNKAMEEINQPIAKSAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIA 181
IE +E R+LF AM I + S S+++ E+ +P I+RPAFT+GGTGGGIA
Sbjct: 123 IEKAESRELFRLAMANIGLKVPASGIARSMDDVRRLGTEMPFPLIIRPAFTMGGTGGGIA 182
Query: 182 NNEEELIEITKKGLKYSMIKQVLIDQSLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMGI 241
N E+L EI +GL S+ +V+I+QS+LGWKEYE EVMRDK D C+++C++EN DPMG+
Sbjct: 183 YNMEDLEEIASRGLTASITSEVMIEQSVLGWKEYEMEVMRDKADNCVIICSIENFDPMGV 242
Query: 242 HTGESIVTAPSQTLSDEFHQKLRDASLQIIRHLKIE-GGCNVQFAVNPEMTDYVVIEVNP 300
HTG+SI AP+QTL+D +Q +RDAS+ I+R + +E GG NVQF +NP+ D VVIE+NP
Sbjct: 243 HTGDSITVAPAQTLTDVEYQMMRDASIAIMREIGVETGGSNVQFGINPDNGDMVVIEMNP 302
Query: 301 RVSRSSALASKATGYPIAKIAAKIAIGRTLDEIQNDVTKETPASFEPTIDYVVVKIPRWP 360
RVSRSSALASKATG+PIAKIAAK+A+G TLDEI ND+T+ET ASFEPTIDYVV KIPR+
Sbjct: 303 RVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITRETMASFEPTIDYVVTKIPRFT 362
Query: 361 FDKFRTVDKKLGTSMKSTGEIMAIGRNLEEALQKAVRSLDIGRFGIIADGKDKEYSNSEI 420
F+KF +L T+MKS GE M+IGR +E+LQK +RSL++G G+ + +DK + EI
Sbjct: 363 FEKFPGARDELTTAMKSVGEAMSIGRTFKESLQKGLRSLEVGAPGLGSRFRDKLPEHEEI 422
Query: 421 VDILEHATDERLFVIAYALDKGWSVDGICERTGINPFFIEKIKKIIDCKKELE---VISR 477
V L R+F + A+ G ++D I E T I+P+F+ ++++++D + +L + +
Sbjct: 423 VAKLRTPNSRRIFYVRLAMLSGMTIDDIHEITNIDPWFLRQMRELVDMEGDLRDFALANS 482
Query: 478 IPVDDEKLKEILLKAKSLGFSDVQISKIFSKTENEIRDLRKRLEVIPVYKMVDTCAAEFE 537
+ D+ +L +L +AK GFSD Q+++++ + E+++R LR + P Y +VDTCA+EFE
Sbjct: 483 MTPDNGELVTLLRRAKEYGFSDRQLAEMWKRPESDVRALRDATGIRPTYYLVDTCASEFE 542
Query: 538 AKTPYYYSAYERYFDEEQNESVSSDRKKVIILGSGPIRIGQGVEFDYSTVHAIFALKELG 597
A TPYYYS YE + E + R+KVIILG GP RIGQG+EFDY HA FALKE+G
Sbjct: 543 AYTPYYYSTYETGHEIE-----AESRRKVIILGGGPNRIGQGIEFDYCCCHASFALKEMG 597
Query: 598 IEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFGGQTAIN 657
++AI+VN+NPETVSTDYDTSD+LYFEPL +E++M+IIE E +G VIVQFGGQT +N
Sbjct: 598 VQAIMVNSNPETVSTDYDTSDRLYFEPLTFEDVMHIIEAEKPDG----VIVQFGGQTPLN 653
Query: 658 LAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALKVVERIG 717
LA+ L +GV ILGTSP +ID AEDR++F ++ KL + Q AT + QA+ IG
Sbjct: 654 LAVPLQRAGVPILGTSPDAIDRAEDRERFQALIHKLDLRQPANATVMNLRQAIAGANSIG 713
Query: 718 YPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVDVDAVCD 777
YP +VRPSYVLGGRAM+IVY+ E L Y + +V + +HPIL+DKFLE A EVDVDA+ D
Sbjct: 714 YPVVVRPSYVLGGRAMEIVYDEEQLTSYFQNSVGEAPEHPILLDKFLENATEVDVDALSD 773
Query: 778 GESVFIGAIMEHIEEAGIHSGDSACVIPPQTLSKEVIEKIAEHTTKLALELGVIGLLNIQ 837
G V++ IMEHIEEAGIHSGDSAC IPP +L + ++I+ T LA EL V+GL+NIQ
Sbjct: 774 GTDVYVAGIMEHIEEAGIHSGDSACSIPPYSLPSSITDEISRQTVALAKELRVVGLMNIQ 833
Query: 838 YAVKDGVVYIIEANPRASRTIPYVSKSVGVPLAKIATNAIMGKKLKEMGYFGLAKSKYVS 897
+AVKDGV++I+E NPRASRT P+VSK+ VPL ++AT ++GK LKE+ + + +S YVS
Sbjct: 834 FAVKDGVIFILEVNPRASRTAPFVSKATAVPLPRLATQVMLGKTLKELDPWSMRRSGYVS 893
Query: 898 VKEAVFPFLKLPGVDPVLSPEMKSTGEAIGIDQDFGKAFYKSQLSANMELPTSGTVFISV 957
VKE+VFPF + PGVD +L PEM+STGE +GI F +A+ K QL+ LP G VFISV
Sbjct: 894 VKESVFPFNRFPGVDILLGPEMRSTGEVMGIAPTFEEAYLKGQLAGGQRLPQQGKVFISV 953
Query: 958 RNRDKDNITKIAKKYHNLGFEIVATRGTARELRLFDIPVREVRKISESMQNSVLDLMQKG 1017
+RDK + +A+ + +LGFEIVAT GTA+ L+ +P V K+ E N ++D+++ G
Sbjct: 954 NDRDKTLVPDVARIFADLGFEIVATAGTAKLLKEHGVPTTHVNKVYEGRPN-IVDMIKNG 1012
Query: 1018 EVDLIINTSSGDKAKTDGYFIRRAAVELNIPCMTTLQGAYAAIKAIEAIKSGELGVYSLN 1077
++ L++NT+SG + D IR+A + +P TT+ GA A K+I A ++ + V SL
Sbjct: 1013 DIALVVNTASGKRTVQDSKSIRQATLMYGVPYSTTVSGARAIAKSIAASRTCGVNVKSLQ 1072
Query: 1078 E 1078
E
Sbjct: 1073 E 1073
Score = 239 bits (609), Expect = 1e-66
Identities = 139/394 (35%), Positives = 223/394 (56%), Gaps = 17/394 (4%)
Query: 1 LKREDIKKVMILGSGPIVIGQAAEFDFSGSQACKSLKEEGIYTILVNSNPATIQTDTNIA 60
++ E +KV+ILG GP IGQ EFD+ A +LKE G+ I+VNSNP T+ TD + +
Sbjct: 558 IEAESRRKVIILGGGPNRIGQGIEFDYCCCHASFALKEMGVQAIMVNSNPETVSTDYDTS 617
Query: 61 DKVYLEPLNPKILEKIIEKEQPDAILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTES 120
D++Y EPL + + IIE E+PD ++ GGQT LNLA+ L++ GV +LG++
Sbjct: 618 DRLYFEPLTFEDVMHIIEAEKPDGVIVQFGGQTPLNLAVP------LQRAGVPILGTSPD 671
Query: 121 VIETSEDRDLFNKAMEEINQPIAKSAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGI 180
I+ +EDR+ F + +++ +A V ++ +AI +GYP +VRP++ LGG I
Sbjct: 672 AIDRAEDRERFQALIHKLDLRQPANATVMNLRQAIAGANSIGYPVVVRPSYVLGGRAMEI 731
Query: 181 ANNEEELIEITKKGLKYSMIKQVLIDQSLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMG 240
+EE+L + + + +L+D+ L E + + + D D V ME+I+ G
Sbjct: 732 VYDEEQLTSYFQNSVGEAPEHPILLDKFLENATEVDVDALSDGTDV-YVAGIMEHIEEAG 790
Query: 241 IHTGESIVTAPSQTLSDEFHQKLRDASLQIIRHLKIEGGCNVQFAVNPEMTDYVVIEVNP 300
IH+G+S + P +L ++ ++ + + L++ G N+QFAV + ++EVNP
Sbjct: 791 IHSGDSACSIPPYSLPSSITDEISRQTVALAKELRVVGLMNIQFAVKDGV--IFILEVNP 848
Query: 301 RVSRSSALASKATGYPIAKIAAKIAIGRTLDEIQNDVTKETPASFEPTIDYVVVKIPRWP 360
R SR++ SKAT P+ ++A ++ +G+TL E+ P S + YV VK +P
Sbjct: 849 RASRTAPFVSKATAVPLPRLATQVMLGKTLKELD-------PWSMRRS-GYVSVKESVFP 900
Query: 361 FDKFRTVDKKLGTSMKSTGEIMAIGRNLEEALQK 394
F++F VD LG M+STGE+M I EEA K
Sbjct: 901 FNRFPGVDILLGPEMRSTGEVMGIAPTFEEAYLK 934