Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (331), Expect = 1e-35
 Identities = 89/316 (28%), Positives = 170/316 (53%), Gaps = 25/316 (7%)

Query: 2   ECQKKILNLTVDSKIAGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKLKE 60
           E + ++  + +D  +AG ++ + L++  + +   ++ +  ++ ++ VN K +  + KL+ 
Sbjct: 3   EIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEA 62

Query: 61  NETVSVE---IDYGINNITPENLTLN--------VIYEDDDLLIVDKSKNMVVHPTKNVL 109
            + V V    ++   N   P +  L+        ++YEDD LLI++K     VH      
Sbjct: 63  GDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGG---- 118

Query: 110 SGTLANAISNHQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIY 169
           SG    AI   + +  Q   +  V+R+D DT+G+L+VAK   + + L  Q  E  ++K Y
Sbjct: 119 SGLHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYY 178

Query: 170 IAVVNGHLDLKEGIIEDSIDLNE-NGIKRELSNFGKISKTKYKVIEELKNASVLEINLLT 228
            A+V GH D +  ++   +  NE N I R   N GK S+T+++++E+   A++++ + +T
Sbjct: 179 YALVMGHWDAECKVVNAPLLKNEVNSIVRVNPN-GKPSETRFRILEKFAEATLVQASPVT 237

Query: 229 GRTHQIRVHLSSTGNYIIGDTLYGE------TSKL-IDRQALHSHILRFIHPITKEKIEI 281
           GRTHQIRVH    G+ I  D  YG+      T++  I+R  LH+  ++F+HP +++K+EI
Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEI 297

Query: 282 ISKLPDDMKNLIKNLK 297
            + L   ++  +  ++
Sbjct: 298 HAPLEAHLEQALTKMR 313