Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 2e-40
 Identities = 99/310 (31%), Positives = 167/310 (53%), Gaps = 23/310 (7%)

Query: 8   LNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISL-KSKLKENETVS 65
           L  TV     G +L   + + F + S   +K++  E KI VN   I+  ++K+   E ++
Sbjct: 7   LTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT 66

Query: 66  VEIDY-GINNITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKIN 124
           V+ +         ++L LN++YEDDD+++++K ++ VVHP       T+ NA+  H    
Sbjct: 67  VQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPI 126

Query: 125 NQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGII 184
            +  +   V+RLD DTTGL++VAK   +  +L + + +  + + Y A+V G +    G+I
Sbjct: 127 AEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM-TAGGMI 185

Query: 185 EDSIDLNENGIKREL---SNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSST 241
           +  I    +  KR L   S  GK + T Y+V E  +  + L + L TGRTHQIRVH++  
Sbjct: 186 DKPI--GRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYL 243

Query: 242 GNYIIGDTLYGETSKL--------------IDRQALHSHILRFIHPITKEKIEIISKLPD 287
            + ++GDT YG  +++               DRQALH+ +L+F HP+T E++E  + +PD
Sbjct: 244 QHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPD 303

Query: 288 DMKNLIKNLK 297
           DM  +   L+
Sbjct: 304 DMVEMTLALR 313