Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 543 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 14/223 (6%)

Query: 71  GINNITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKI 130
           G+   + E L L ++YED DLL + K   ++  P    L    A  +   Q  +   Y +
Sbjct: 327 GLPPSSDEPLELPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCV 386

Query: 131 RFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDL 190
             V+RLD  T+G+L+VA+N  +   L +Q     + K+Y A++ G  D   G I+  + L
Sbjct: 387 --VHRLDQATSGILLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTID--LPL 442

Query: 191 NENGIKRELS----NFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLS---STGN 243
             +  +R       + G+ + T Y+ I++  +   +E+  +TGRTHQ+RVH++     G 
Sbjct: 443 RPDWTRRPYQLVDRDRGRPALTYYRCIDQTGDRCRMELEPITGRTHQLRVHMAHPEGLGQ 502

Query: 244 YIIGDTLYGETSKLIDRQALHSHILRFIHPITKEKIEIISKLP 286
            I+GD LYG++S   DR  LH+  +RF HP   + I++ +  P
Sbjct: 503 PILGDDLYGQSS---DRLYLHARSIRFRHPSQLDWIQLTTDTP 542