Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  128 bits (322), Expect = 1e-34
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 75  ITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNH--QKINNQNYKIR- 131
           + PE + L+++YED DLLIV+K+  MVVHP     +GTL +A+  H    +     + R 
Sbjct: 74  LAPEEIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHALLAHCGDSLTGIGGEQRP 133

Query: 132 -FVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDL 190
             V+RLD DTTG ++VAK   +   L  Q+ +   ++ Y+ VV G      G +E+ I  
Sbjct: 134 GIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVVFGSPRQDSGQVEEPIGR 193

Query: 191 NENGIKR----ELSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGNYII 246
           +    KR     +   G+ + T ++V E L N ++L   L TGRTHQIRVH    G+ ++
Sbjct: 194 HLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATGRTHQIRVHSHHMGHPLV 253

Query: 247 GDTLYGETSKL---IDRQALHSHILRFIHPITKEKIEIISKLPDDMKNLIKNLK 297
           GD LYG    L   +  QALH+  L   HP T E I + + LP + + L++ L+
Sbjct: 254 GDPLYGNGRSLGVNLQGQALHAWRLSLQHPRTGEVIAVEAPLPAEFQRLLRVLR 307