Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase from Sinorhizobium meliloti 1021

 Score =  131 bits (329), Expect = 2e-35
 Identities = 96/304 (31%), Positives = 155/304 (50%), Gaps = 36/304 (11%)

Query: 30  ELSNKMIKKFDKENKIFVNSKNISL-KSKLKENETVSVEIDYGIN-NITPENLTLNVIYE 87
           E S   IK   ++  + +N   ++  K K+   ++  + +    +     E + L+V+YE
Sbjct: 36  EFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALPEPEDPEPKGEAIPLDVLYE 95

Query: 88  DDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNY----KIRFVNRLDMDTTGL 143
           D DL+++ K   +VVHP     +GTL NA+ +H   +        +   V+RLD DT+G+
Sbjct: 96  DADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLDKDTSGV 155

Query: 144 LIVAKNSYSHQQLAKQMDE----GILEKIYIAVVNGHLDLKEGIIEDSI----DLNENGI 195
           ++VAKN  +H+ L+ Q  +    G LE+ Y AVV G     +G I+  +    D  +  +
Sbjct: 156 MVVAKNDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPRQLKGKIDAPLGRAGDRTKRAV 215

Query: 196 KRELSNFGKISKTKYKVIEELKN-------ASVLEINLLTGRTHQIRVHLSSTGNYIIGD 248
           KRE S+  + + T Y+V+E           AS +E +L TGRTHQIRVH++  G+ +IGD
Sbjct: 216 KREDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLETGRTHQIRVHMAHIGHPLIGD 275

Query: 249 TLYGETSKL---------------IDRQALHSHILRFIHPITKEKIEIISKLPDDMKNLI 293
             YG   +                  RQALH+ +L+F HP T E +   + +P DM+ LI
Sbjct: 276 PDYGAAFRTKANLLPEPARAAVNRFPRQALHAFMLQFEHPATGETMHFETPVPADMQELI 335

Query: 294 KNLK 297
             L+
Sbjct: 336 AALR 339