Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  127 bits (318), Expect = 4e-34
 Identities = 90/311 (28%), Positives = 156/311 (50%), Gaps = 25/311 (8%)

Query: 8   LNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSV 66
           L   + +   G +L   + + F + S   +K++     ++V+   ++ K + K  E+  +
Sbjct: 7   LKSEISATQTGLRLDQAIAELFPDYSRTRLKEWILGGNVYVDGVVVT-KPREKVLESQVI 65

Query: 67  EIDYGINN---ITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKI 123
           EI+  +        + + L+++YEDD +L+++K   +VVHP      GTL NA+ +H   
Sbjct: 66  EIEATLEEEVAAEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHHCPE 125

Query: 124 NNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGI 183
                +   ++RLD DTTGL++VAK   +   L   +    + + Y A+V G +    G 
Sbjct: 126 IEHVPRAGIIHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMTAG-GT 184

Query: 184 IEDSIDLNENGIKRE---LSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSS 240
           ++  I    +  KR    + + G+ S T Y+V E+ +  + L + L TGRTHQIRVH++ 
Sbjct: 185 VDAPI--GRHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMAH 242

Query: 241 TGNYIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEIISKLP 286
            G+ ++GD +YG              E  K   RQALH+  L   HP+T E +   + +P
Sbjct: 243 IGHVLVGDPVYGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAPIP 302

Query: 287 DDMKNLIKNLK 297
           +DM  L K L+
Sbjct: 303 EDMVLLTKALR 313