Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  103 bits (257), Expect = 5e-27
 Identities = 83/316 (26%), Positives = 153/316 (48%), Gaps = 39/316 (12%)

Query: 10  LTVDSKIAGNKLIDVLKDNFELSN------KMIKKFDKENKIFVNSKNISLKSKLKENET 63
           +++D   AG ++     DNF L+        MI +  ++ ++ VN K I  + KL   + 
Sbjct: 23  ISIDEDGAGQRI-----DNFLLAKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLAAGDE 77

Query: 64  VSV------EIDY------GINNITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSG 111
           V V      E DY       +N +    L   +++ED  +++++K   + VH    V  G
Sbjct: 78  VRVPPVRVAEKDYRTAPSANLNRVA--QLEDRILFEDKQIIVLNKPAGIAVHGGSGVDYG 135

Query: 112 TLANAISNHQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIA 171
                I + + +      +  V+RLD DT+G+L++AK   + + L  Q+    ++K+Y A
Sbjct: 136 V----IESLRSLRPTCKFLELVHRLDRDTSGVLLIAKKRMALRHLHDQLRNKQMQKVYQA 191

Query: 172 VVNGHLDLKEGIIED---SIDLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLT 228
           +V G     + +++     I L        +++ GK S+T+++V+     AS++E + +T
Sbjct: 192 LVRGQWQEHDRVVKAPLLKITLKSGERIVRVNSEGKPSETRFRVLRRFDEASLVEASPVT 251

Query: 229 GRTHQIRVHLSSTGNYIIGDTLYGE-------TSKLIDRQALHSHILRFIHPITKEKIEI 281
           GRTHQIRVH    G+ I  D  Y E        +K + R  LH+  L F HP ++ ++ +
Sbjct: 252 GRTHQIRVHCQYQGHPIACDDKYSEQKFDDAMRAKGLQRLFLHAAQLTFTHPESETQMTV 311

Query: 282 ISKLPDDMKNLIKNLK 297
            + L  D+  ++  L+
Sbjct: 312 QAPLDGDLTAVLDALE 327