Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  144 bits (364), Expect = 2e-39
 Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 25/302 (8%)

Query: 12  VDSKIAGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSK-LKENETVSVEID 69
           VD++ AG +L   L      LS   +++   E ++ VN + I   S+ +K  +TV VE  
Sbjct: 29  VDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRVEEP 88

Query: 70  YGINNIT-PENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNH-----QKI 123
             I     PE + L V+YEDDDL+++DK+  MVVHP       TL NA+  H       I
Sbjct: 89  PPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSGI 148

Query: 124 NNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGI 183
             +  +   V+RLD DT+GL+I AK   +H  LA+Q     L + Y+ +V G      G 
Sbjct: 149 GGER-RPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAAGS 207

Query: 184 IEDSIDLNENGIKR--ELSNFGKISKTKYKVIEELKN-ASVLEINLLTGRTHQIRVHLSS 240
           I+  +  +    K+   +S  GK + T Y+V+ +++  AS+++  L TGRTHQ+RVH++ 
Sbjct: 208 IDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHMAH 267

Query: 241 TGNYIIGDTLYG-------------ETSKLIDRQALHSHILRFIHPITKEKIEIISKLPD 287
            G+ ++GD +YG             E    + RQALHS  L F+HP T E +E +S+LP 
Sbjct: 268 IGHPLLGDAVYGHRNIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGESLEFLSELPL 327

Query: 288 DM 289
           D+
Sbjct: 328 DI 329