Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  145 bits (366), Expect = 1e-39
 Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 42/308 (13%)

Query: 31  LSNKMIKKFDKENKIFVNSKNIS-LKSKLKENETVSVEIDYGINN-ITPENLTLNVIYED 88
           LS   + +  +  ++ VN   +S  K+K+ E   + + I+   ++ I PE++ L VIYED
Sbjct: 32  LSRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEAEDSHIGPEDIPLEVIYED 91

Query: 89  DDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNY----KIRFVNRLDMDTTGLL 144
           DDL++++K   MVVHP     SGTL NA+ +H   N        +   V+R+D +T+GLL
Sbjct: 92  DDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGGVKRPGIVHRIDKETSGLL 151

Query: 145 IVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKE--------------GIIEDSIDL 190
           +VAK+  +HQ LA Q ++  +E+ Y A+  G  D  +               I++ +  L
Sbjct: 152 VVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVKGTSFEPGNILKLTTQL 211

Query: 191 NENGIKRE----LSNFGKISKTKYKVIEELKN---ASVLEINLLTGRTHQIRVHLSSTGN 243
             +   R+    L   G+ + T+ ++++        +++E  L TGRTHQIRVH++  G+
Sbjct: 212 ARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLETGRTHQIRVHMAHGGH 271

Query: 244 YIIGDTLYGETSKL---------------IDRQALHSHILRFIHPITKEKIEIISKLPDD 288
            ++GD +YG   KL                 RQALH+ +L FIHP+T + +   + LP+D
Sbjct: 272 GLVGDPVYGGKRKLAAKSLPEDTAAAIQAFPRQALHAAVLGFIHPVTGDAMRFEAPLPED 331

Query: 289 MKNLIKNL 296
           M +L++ L
Sbjct: 332 MAHLLQKL 339